| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3818 |
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| Symbol | |
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| ID | 4175598 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4607623 |
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| End bp | 4610547 |
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| Gene Length | 2925 bp |
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| Protein Length | 974 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638056846 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_663372 |
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| Protein GI | 109900117 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.003378 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAACA CACACTTTTT TAAACCAGCC TTGTTGTCTA TCGCTGTCTC AACGGCTATG
TATTCCAACG TCTCTTTTGC ACAGGAAGCT GCGCAAGCTG AGGATGTAGA AGTCATCTCA
GTCTCAGGTA TTCGAGGTTC GCTTATCCGC GCTCAAGCGG TAAAGATGGA GAATACTTCA
ATCGTAGAAG CCATTTCAGC TGAGGACATT GGTAAATTAC CAGACTCCTC TATCGCAGAG
TCATTAGCGC GTTTGCCAGG TATGTCTGGT GAAAGAGTAG GTGGGCGTAC CTCTGGTATC
TCTATCCGTG GTTTTAAAGA AGATTTCACT GGTACCTCAT TAAATGGCCG CGAGTTAATC
GGCATTGGCG ACAACCGCGG TGTAGAATAC GACTTGTATC CGTCAGAGAT CATGACAGGT
GCTACCGTTT ATAAAACAAC AGATGCGGCA TTAATGGTGC AAGGCATTGG TGGTACAGTT
GATTTACAAA CTGTGCGTCC TCTTCAAGCT CAAGAAACCT TAACGGTTAA TGGTGTTTAT
GAGCTTGCTG GCCGTGACTC AGACAACCCT GAATTTGATA ATAAAGGCCA TCGTTTATCA
CTATCATTCG TTGAAAAATT TGCCGACGAT ACTATTGGTT TGGCGGTGGC ATTGGCGACC
ACTGAATCAC CTAATAACCA GCGTAAATTT GGTGTGTGGG GATACAACCC ACCTAATGAA
GATGGCCATA TATTACCATC AGGCTTGGAT ACTAATGTGC AAAGCCAAGT GCTCGACCGT
GACACTGTTT CTGCCGTGTT GCAGTTCCAA CCTAATGATA GCTTAAATAT CGTTATTGAT
GCGTTGGATA TCAGCTTCTC TGACTCAGGT ATTATTCGCG GTTTTGTCGA ACCTTTTGAA
GCCACAAACG TAACAGGTAC AGGCTTCAAC ACCACAGGTA CGCAGATTAA CGCAAACTCT
GTATTGATTA ACAATCCTAA GCAGAAAGAC GGGGATTTAT CTGTTTATGG TTTAAACGTG
GAATATCACG TAAACGATAA CTGGTCGGTT AAACTTGATG TAGCAAGAAG TGAATCAACT
AAGCGCGACC TACAAGGGGA GTCATATTCT GGCCTTGCTC GTAATGGTGC ATTAGACGCT
ACTGACCCTT CTCAATTTGG TACACGTGAA TTCGAGATGA GCCAAGACGG CATCTACTTT
ACCGGATCGA CGGGCTTAGA GGCATTCTCA GACCCAAGCG CTCTTCAATT AACTGGGCCG
CAAGCTTGGG GCGGCGGTTT GAAAAACCTT GCAGATAATT TTGCAACAAC AGAATTGATG
GCTAATGGTG ACCCATACAG TTACGTTCAA GCCCAAGATG GCTTTTTAAA TTATGCTGAT
TTCGAAGAAG AGTTAACCAC CTACAAGTTT GAAGTGGTTG GCTTACTCGA CGGCGATATT
TTCCATACCG TCACCGCGGG TATTAATTAC AGCGACCGCT ATAAGAGCAA AGACAACAAA
GGCTTTTTCG TAACGGCCTC TTCATATCCT TTCTCTGATG CCATTCCTTC TCAATATGTG
TACAACGGAT TAGCCGACTT AACGTGGGCT GGCTTAGGTG AAGTTGTTGC ATACGACGGT
TTTGCTCCAT ACAACGATGG TGAGTATCAA TATAATGATG CAGGTTTACT TGAACCTGAC
CGTTTAGGCG ACACCTATGT AGTAGAGGAA GAAGTTACCA CTATTTACGC GAAAGTCGAT
TTTAATACCG AGATTGCTGA CTTCCCGGTA ATGGGTAACG TGGGTCTGCA ATACGTACAA
ACGGATCAGT CTTCTACCGG TTATAACGGT ATTGTTGGGG CTAACTTTGC AGTGTGTGAC
GACGATAACG ATCAACAAAT TGATGAATCA TGCGTTGTTT CTGGGGGAGA TGAATACAGC
CATGTACTGC CTAGCTTAAA CGTCAGTGTG GAGGTTGGTG ACAATCAATT CGTTCGTTTT
GCTGCGAACA AAGCGATTAG CCGAGCGCGT ATAGATCAAA TGAAAGCGTC AAGCTTCGTG
AAGTTTGACC AAAACATTAC GCTTATCGCT ATTCCTAACA CAATTGAGGC GGTCAATGAC
TACGGTTCAC CTTGGTCTAA ATTTGCTGGT AACCCTGAGT TGCGCCCACT AGAATCCAAC
AACTTTGATT TGTCGTTCGA GCATTACTTC GAAGATGAAG GGTACTTATC AGCAGTTCTT
TTCTATAAAG ATCTTGTTAA TCTAACCCAA GAAAGCAGTG GTGATAGCTC ACTGATTAAC
TTCAGAAACG ACGAAACAAA CGACGGTGCT GATTACTACA TTCCGGGTTT CCACGACAGA
TTAGCTGTGT TCACGGGTGA GCATGATCCT GCAGGGGTTT TCTACAATGA AGGCGATTTA
ATCACTCCGC CTGATTACGG CACCTATTCA TTCTTTGAAG ATGGCCTCAA AGGAGAAGTG
AAGGGTATCG AATTGACAGG TAACGTACCA TTCAACATTT TCAGTGACAG CTTAGATGGC
TTTGGTGTTG CGGCATCGGC CATTTTCATT GATGCAGAAC TAGATGATGG TTCACCGCTT
GTTGGTCAAT CTGATCGCAC GTATTCATTG ACTGCTTACT ATGCCATGGA CGGTTTTGAA
ATACGTGTCG CCGGTACCGA TCGCTCTGAT TACTCTACGT ATCAACGTGG TGGCTCAAAT
AAAATTGAAA CGGCCCAGCG TAACGGCGTA ACCCTAGTCG ATGCACAAAT TAGCTACGAC
TTCGAAAACT CTGATATTGA TTATCTCAAG GGGCTACGTG TTTCATTGCA AGGCACCAAC
TTGACTGACG TGGATGAGGA AACAGTGGAT ACCAACGGTA TCGTAACGGC TCGTCGTCAA
TTTGGCCCAT CTTATATGGT TAACGTTAAC TACGCGTTTT ATTAA
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| Protein sequence | MKNTHFFKPA LLSIAVSTAM YSNVSFAQEA AQAEDVEVIS VSGIRGSLIR AQAVKMENTS
IVEAISAEDI GKLPDSSIAE SLARLPGMSG ERVGGRTSGI SIRGFKEDFT GTSLNGRELI
GIGDNRGVEY DLYPSEIMTG ATVYKTTDAA LMVQGIGGTV DLQTVRPLQA QETLTVNGVY
ELAGRDSDNP EFDNKGHRLS LSFVEKFADD TIGLAVALAT TESPNNQRKF GVWGYNPPNE
DGHILPSGLD TNVQSQVLDR DTVSAVLQFQ PNDSLNIVID ALDISFSDSG IIRGFVEPFE
ATNVTGTGFN TTGTQINANS VLINNPKQKD GDLSVYGLNV EYHVNDNWSV KLDVARSEST
KRDLQGESYS GLARNGALDA TDPSQFGTRE FEMSQDGIYF TGSTGLEAFS DPSALQLTGP
QAWGGGLKNL ADNFATTELM ANGDPYSYVQ AQDGFLNYAD FEEELTTYKF EVVGLLDGDI
FHTVTAGINY SDRYKSKDNK GFFVTASSYP FSDAIPSQYV YNGLADLTWA GLGEVVAYDG
FAPYNDGEYQ YNDAGLLEPD RLGDTYVVEE EVTTIYAKVD FNTEIADFPV MGNVGLQYVQ
TDQSSTGYNG IVGANFAVCD DDNDQQIDES CVVSGGDEYS HVLPSLNVSV EVGDNQFVRF
AANKAISRAR IDQMKASSFV KFDQNITLIA IPNTIEAVND YGSPWSKFAG NPELRPLESN
NFDLSFEHYF EDEGYLSAVL FYKDLVNLTQ ESSGDSSLIN FRNDETNDGA DYYIPGFHDR
LAVFTGEHDP AGVFYNEGDL ITPPDYGTYS FFEDGLKGEV KGIELTGNVP FNIFSDSLDG
FGVAASAIFI DAELDDGSPL VGQSDRTYSL TAYYAMDGFE IRVAGTDRSD YSTYQRGGSN
KIETAQRNGV TLVDAQISYD FENSDIDYLK GLRVSLQGTN LTDVDEETVD TNGIVTARRQ
FGPSYMVNVN YAFY
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