| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3797 |
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| Symbol | |
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| ID | 4175577 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4575912 |
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| End bp | 4577534 |
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| Gene Length | 1623 bp |
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| Protein Length | 540 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638056825 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_663351 |
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| Protein GI | 109900096 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTTGTATC TTTTCTCTGT GTTGATGATT GCTTGTGGCT GCGTGTTTCT GCTGATCAGT
GTTCGCCCTG TTAATCACAT TTATAAAACG GATAGCAATT TAGGATGGTT AGTGCTGCGC
AGCCTGGTCG TATTTTTTGT ATTCGGTTAC TTTGGCGTTT TTTATTATTT CGTGCAAAAA
ATGACGATTA ATACCGCGGA TGTGATTGTC TCAGCGATCA TGATGGCGGG TGGTTTTTTT
GTATTTCTGG TGACACGTCT TAGTTTAAAA AGCATGGTGA AATTGAATCA ACTTGCTGCC
CAAGAACGCA GTAATTTGTT ACACGATCCC CTAACGGGTT TGGCGAATCG AGCGTATTTG
ATGCAAGACA TGCAGGCGCT TATTGCAAAT GAAGAGCAAT TTGACTTATT GATCCTCGAC
TTAAATCAGT TCAAGCAAAT TAACGATGCG TTAGGCCACT ATTTCGGTGA TGTACTGCTT
TGTCAGGTTG GACTAAAAAT TGGCCAAACT CTGCCAAATA CGTGTACTTT GTATCGTTTA
GGGGGGGATG AATTTGCCAT AGTATCGACA GCAATGGTAA GCGAAAATAC AAGCCAAAAG
GAAAATGAAT CAGCAAACAG AATCGATGAT ATCGCACGAT TGATTCACAG CACTATGGAC
GAAAATTTCG AGATAGAAAG CTACGAGCTA AGTGTTAGCG CATGTATTGG AGGTACGGGG
TTTCCTGAGC TTGGCCGTTC TGCCGAAATA CTGCTTGGCC AAGCGAATTT GGCCTTGTAT
GAATGTAAGA AAAACACCAG CTCTTTTAGC CATTATTCAT CAGCATTTGA AACGGGTGCC
GCTGATAACT TAAGTATTGC GACGCGTTTA AAGCAAGCTG TTGCTTTGGA AGAGTTTGAA
CTTTGGTATC AACCTATTAT CGACTTATCC GATGGCAGCG TGAATGGGGC GGAGGCGTTA
ATTCGCTGGC CTCAATTAGA TGGAAGTTAT ATTGCGCCAG ATAAGTTCAT AAAAATCGCA
GAACAAAGCC TACTGATAAC CCAAATAACC CAACGGGTGA TGAATATCGT CAAAGAAGAT
ATTCAGTTAT TCAATCAATC AAAATTGAGC TTATGCGTGC ACCTCAACTT GTCTGTTAAG
GACCTGCAAA GTCCTCACTT GGTAGATAAT ATTAACTCAA TATTCAGTCA ATGCGATTGG
AGTAAGCATG CTCTGATGCT AGAAGTCACA GAAAGCGCGA TGATGACAGA TGTCGCTAGG
GTCAAAATTA CCATGGCACA GATTGCAAAC ACAGGGTTGG CCTTTAGTAT TGATGACTTT
GGCACAGGCT ATTCTTCCTT AGCGTTATTG CGCGACCTAC CTGTGAATCA GATAAAAATA
GACCGCTCTT TTGTGAGTAA TATTCTAAAA AGTGAAGATG ATTTGGCAAT CGTTAAGTCA
ACCATTTATC TGGCGAAACA TTTAGGCTGT AACATTGTCG CTGAGGGGGT GGAGGATGCT
CAAACCGGTC AGCTTCTTAA ATCTCTGGGC TGTGATCACG CCCAAGGTTA CTATTACAGC
AAGCCATTAA AAATAGAATC TTTCATTCAA TTTGCTGAGT CACATAGGCC CATTACTCAA
TAA
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| Protein sequence | MLYLFSVLMI ACGCVFLLIS VRPVNHIYKT DSNLGWLVLR SLVVFFVFGY FGVFYYFVQK
MTINTADVIV SAIMMAGGFF VFLVTRLSLK SMVKLNQLAA QERSNLLHDP LTGLANRAYL
MQDMQALIAN EEQFDLLILD LNQFKQINDA LGHYFGDVLL CQVGLKIGQT LPNTCTLYRL
GGDEFAIVST AMVSENTSQK ENESANRIDD IARLIHSTMD ENFEIESYEL SVSACIGGTG
FPELGRSAEI LLGQANLALY ECKKNTSSFS HYSSAFETGA ADNLSIATRL KQAVALEEFE
LWYQPIIDLS DGSVNGAEAL IRWPQLDGSY IAPDKFIKIA EQSLLITQIT QRVMNIVKED
IQLFNQSKLS LCVHLNLSVK DLQSPHLVDN INSIFSQCDW SKHALMLEVT ESAMMTDVAR
VKITMAQIAN TGLAFSIDDF GTGYSSLALL RDLPVNQIKI DRSFVSNILK SEDDLAIVKS
TIYLAKHLGC NIVAEGVEDA QTGQLLKSLG CDHAQGYYYS KPLKIESFIQ FAESHRPITQ
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