| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3785 |
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| Symbol | |
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| ID | 4175565 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4559193 |
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| End bp | 4561439 |
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| Gene Length | 2247 bp |
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| Protein Length | 748 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638056813 |
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| Product | ribonuclease R |
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| Protein accession | YP_663339 |
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| Protein GI | 109900084 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAATCAAA CCGCACAATT ATCCACTATC CGTACGTATG CCAACCCCAT CCCTGGCCGT
GAGTTCATTC TTAGTCTTTT TAGTAGCCTA AAAAAACACT TAAATCGCGA GCAAATAGCA
GATGCTTTAG CTCTCAATTC CCCTCAAGAA AAAGAAGCGC TTAGAAGACG TTTGCGCGCA
ATGGAGCGTG ACGGGCAACT ATCATTTCAA CGCAAGGGTT ATCAATTAAT TGATCCTGAT
TCGCTGGTTA GCGGCCCTAT CAGTATTCAC CCTGAGGGTT TTGGTTTTGT TACCTATAGC
GATGTCGAAA GAGACTTGTT TCTGCCAAAG AGCCAACTGA ACCATGTATT TGATGGTGAT
GTGGTACAAG TGCTAGTAGA GCCTGGGAAA AACGCAAAAC GTGCCTACAG TAACCTGATT
AAAGTACAAA AGCGCAATAC CACCCACGTT GTGGGTATGT TGCAACGCAA AGGTAAGCAT
TACTTTTTAC TGCCCGATGA CGTTAAAGTT TCACACACAA TTCATGTTGA GCACAGCGCC
TTAAACCAAG CGCGCGTCGG CCAATATGTG AGTGGCAAAA TTACCCACTA CCCTGACTTT
CGCCAAGAAA CACACGTTGA AATTACTGAA GTATTAGGCA ATGCAACCGA TGCTGGCATA
GAAAGCACAT TGGCGCTTTA TCGCCACGGT ATTTCTGACC AGTGGGATAA AACATTGCTC
GACAAGGCAA ATACACATGG CACGCGAGTA TCACAAGCGG ACAAAGCACA GCGCACAGAT
TATCGCAGTT TGCCGTTTGT CACTATCGAT GGGGCTGATG CGAAGGACTT TGATGACGCC
GTTTATTGTG AGAAAACTCA AGCAGGAAAT TGGCGTTTAT TGGTAGCAAT AGCTGATGTG
TCGCATTATG TATTACCCAA TGACGCATTG GATATTGAAG CGCAAGCGCG CGCCACATCG
ATTTATCTGC CAGATCAAGT TGTCCCAATG CTACCCGAGG CATTGTCTAA CGGCTTGTGC
TCGTTGAATC CGCATGAAGA CCGCTTGGTG ATGATGTGTG AGATGACTAT CAACGCAACA
GGGCTCGTTA CTCAAGCAGC TTTTAGCGAA GGCGTGATTC AATCTCATGC ACGACTAACC
TACAATCAAG CGAATGCGCT CGTCACTCAG CCAAACAGTA AGCTTGGCAA AACCACCGCC
GCTTCTAGCC CAGCCATCGT TCCCCATGTT AAGGATTTAC ATGCTCTTTT TCAGGTGCTA
ATTAAGCAGC GTAAGCAACG CGGTGCGATT GATTTTGAAA CGCGAGAACT TGCACTCAAG
CTGAACAAAC ACAAAAATAT TGCGAGTATT TCTCCCGTAA AGCGAAATGA CGCTCACCGC
ATGATTGAAG AATTTATGTT ATGCGCGAAT GTCGCTACGG CACAATTTTT ACAACGTCAT
AAAATTCCTA GTTTATTTAG AGTGCACTTA GGTCCACAGC AAAAGAAACT CACGGCATTA
CGTGCATTTT TGACTGAGAA AGGCTTAACC CTTGGCGGCG GAGATAGTCC AAGCCCGCAA
CATTACAATG ACTTGTTGAA AAAAGTGAAC CACAGGGCTG ATGCAAAACT TATTCAAATG
TTGTTACTAC GCTCGCAAAG CCAGGCGGAA TACTCCCCCG AGAATCAAGG GCACTTTGGT
TTAGCCTATG AGGCGTATGC ACATTTCACC TCGCCCATAA GACGCTACCC AGATTTGTTA
ACCCATCGCG CGATAAGAGC AACGCTACGA AGCAATAAAT CCGCTAATAA CGCCAGCAAG
TCTGAATCCG GTTTCAAACG GTTATTGCGT CAATTAAAGC TCGGCGTATC AATCGGTAAG
GCTGTGCCGA ATAATGCATC CCCCTACACG GCTGAAGAGG TAGCGCTTTT AAGTCACCAT
TGTTCTGGGC AATCGCGTTT AGCTGATACG GTTAGCCGAG AAGTCGAAAG TGCACTTATG
TGTAAATACA TGCAACCTTT TATCGGTGAC ACTTTTGGTG CCTCTATATC AGGAATGAAT
AATGCTGGTT TGTTTGTGAC GCTTGAAAAT ACAGGAGCAG AAGGTTTAGT CAGTATGATG
AGTCTACCAG GCGAGACATA TACGTTTGAT GCCCAAAAAC AGCAAGTCAC CAACGGACAG
AACACTCACC GCATAGGCGA TCATTTAACG GTCGTGTTAA AAAGTGTTGA TATACGCGCT
CGAAAAATGA GCTTTGAACT GGCATAA
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| Protein sequence | MNQTAQLSTI RTYANPIPGR EFILSLFSSL KKHLNREQIA DALALNSPQE KEALRRRLRA
MERDGQLSFQ RKGYQLIDPD SLVSGPISIH PEGFGFVTYS DVERDLFLPK SQLNHVFDGD
VVQVLVEPGK NAKRAYSNLI KVQKRNTTHV VGMLQRKGKH YFLLPDDVKV SHTIHVEHSA
LNQARVGQYV SGKITHYPDF RQETHVEITE VLGNATDAGI ESTLALYRHG ISDQWDKTLL
DKANTHGTRV SQADKAQRTD YRSLPFVTID GADAKDFDDA VYCEKTQAGN WRLLVAIADV
SHYVLPNDAL DIEAQARATS IYLPDQVVPM LPEALSNGLC SLNPHEDRLV MMCEMTINAT
GLVTQAAFSE GVIQSHARLT YNQANALVTQ PNSKLGKTTA ASSPAIVPHV KDLHALFQVL
IKQRKQRGAI DFETRELALK LNKHKNIASI SPVKRNDAHR MIEEFMLCAN VATAQFLQRH
KIPSLFRVHL GPQQKKLTAL RAFLTEKGLT LGGGDSPSPQ HYNDLLKKVN HRADAKLIQM
LLLRSQSQAE YSPENQGHFG LAYEAYAHFT SPIRRYPDLL THRAIRATLR SNKSANNASK
SESGFKRLLR QLKLGVSIGK AVPNNASPYT AEEVALLSHH CSGQSRLADT VSREVESALM
CKYMQPFIGD TFGASISGMN NAGLFVTLEN TGAEGLVSMM SLPGETYTFD AQKQQVTNGQ
NTHRIGDHLT VVLKSVDIRA RKMSFELA
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