| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3776 |
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| Symbol | |
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| ID | 4175556 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4547345 |
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| End bp | 4549468 |
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| Gene Length | 2124 bp |
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| Protein Length | 707 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638056804 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_663330 |
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| Protein GI | 109900075 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.658574 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACTCTG GAACACACGG GCTAAAGCTC ACTCATCTCA GTGCTTGCTT AGCTAGCCTG
TTTATTCATC ACGGCGTTGC AGCAGATGAA CAAGTTGCGT CACAAAACGT CGACCAAGAA
AATGCTATCG AAACCTTGAG TATCGTAGGG TCACGACAAG CATATCAAGG TAACTTTAGT
CCTCTAGAAA CCCCCCAATC AGAATTAAAA ATAAATTCTG AAGCGCTAGC AAATGCAGGG
GCAATTGATT TAAACCAAGC ATTAGATTTG TCGGCCTCTG TTGCCCGTCA AAATAATTTT
GGTGGACTGT GGAACAGCTT TGCGTTGCGG GGATTTGTGG GTGATGAAAA CCTACCCAGT
AACTATTTGG TAAATGGCTT TAATGCAGGC AGAGGCTTTG GCGGCTCTCG CGATTTATCA
GGCATAGAAT CAGTTGAAGT GTTAAAAGGC CCACGTGCCG CACTATTTGG TCGCGGTGAG
CCAGGGGGCA CGGTTAACCT TGTTACTAAG CGCCCAACTT TTGATACTGC AGGAGAAATA
AAGGTATCCG CAGGAAGCTA CGATACATAC CGAGCTGATT TAGATTACAC CACCCCGTTG
AGCGACGATG TAGCGGTGCG TTTTGTCGGC TTCTATGAAG ATGCTGGCAG CTTTCGTGAC
ACGATAAAAA GCAAGAAAGA AGGCTTTAGC CCATCAATTG CGTGGGAAAT TAGCGAGCAA
AGCACGCTTG TTTACGAATT AGAATACGCT CATCAAGAAG TACCTTTCGA CCGAGGTGTG
TTAGCGATAG ACAACAAGCT TGGGGTCATT CCACAAAGCC GCTTTCTCGG TGAGCCCGCC
GACGGCCCGA TTAAAACTGA TACGCTGGGG CATCAGGTAG AGTTTCAACA CGACTTCGAC
GATAACTGGA GTGTATTACT CGGCGCTAAC TACCGTGATA CCTCATTAGA GGGCTTCGCG
ACGGAAACAG GTTTTTCTGG CGTCGTTGAC GATGAAGTAA ATCGTTTTCG CCGTTACCGT
GACTATGATG CCAAATACCA AGTCTTTCGC GCTGAGCTAA CCGGTAATTT AGAAATAGCA
GGTGTAGAGC ACCGTTTAAT CGTGGGTGTT GATTCAGACA AGTTTGAGAA TGACCAATTT
GCTCTACGTG ACCGTACCAC AGAGCAATAC ATCAACGTAT TTTCCCCGGT TTATACTGCT
GCAAATGCGT TAGCAAATGA CTTTTCTACT CAAATTGATC GCGTTGAAAC ACAAGAATCT
CTTGGTGTGT TTATACAAGA TCAAATCAGC ATAACCGACA AGCTCGATGT GCGTATCGGC
GCACGGTTTG ACGACTATCA ACAAACAATG AATAACCGCT TATCTGAAAG TCAGTCAAAA
CAAACAGAAT CACGGGTTAG CCCTCAATTT GGCATAGTGT ATGAAGCATC AGATACGCTT
TCATTGTACG CCGCTTATGG CGAAAACTTC CGCCCATTAT CTGGCACCGA CAGCAATGGT
GACGGCTTTG AGCCAAACCA GTCGACCTCT GCCGAGGCGG GTATTAAGTT CACGCTAAAC
GATGGTGCGT TGTTTGGAAC GGTCTCCATA TTCAAAGTCG AACAAGACAA TCTTCTCGTG
GTTGACGACC CGACTAGTTT TACTTACGCA GCGATTGGCG AAGCCGAAAG TCAAGGCATA
GAAATAGACA TCAACGGTGA AATAGCTGAC GGATTAACCC TTTGGGCCTC TTATGCTTAT
GTGGACGCGA AAACCAAAAA CGCTTTCTTT GATGGCAATT TTGGTTACAC CATTGAAGCT
GGGACAGACT TACTCAATGT GCCTGAGCAG CAACTCAGTC TGCAACTGGT TCAATTGCTT
GAACTAGATG GTAAAGACCT CGAAGTCGGT GGTGGCTTAG TTTACGTAGA CAAAAGAAAT
GGTTACTTTG GTACCGATTT CACTCTACCT AGCTATACCA CTGCCAGAGC GTTCATCGCT
TATGACATAA CGAAGTCGAT TTCGTTACGG GCTGAAGTTG ATAATTTATT TGATAAAGAT
TATTACACCA ACTCATTTGC AGACGCTTGG GTACAACCGG GTACTCCCCG TAGCTTTAGA
GTGTCTGCCT CATACCACTT CTAG
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| Protein sequence | MNSGTHGLKL THLSACLASL FIHHGVAADE QVASQNVDQE NAIETLSIVG SRQAYQGNFS
PLETPQSELK INSEALANAG AIDLNQALDL SASVARQNNF GGLWNSFALR GFVGDENLPS
NYLVNGFNAG RGFGGSRDLS GIESVEVLKG PRAALFGRGE PGGTVNLVTK RPTFDTAGEI
KVSAGSYDTY RADLDYTTPL SDDVAVRFVG FYEDAGSFRD TIKSKKEGFS PSIAWEISEQ
STLVYELEYA HQEVPFDRGV LAIDNKLGVI PQSRFLGEPA DGPIKTDTLG HQVEFQHDFD
DNWSVLLGAN YRDTSLEGFA TETGFSGVVD DEVNRFRRYR DYDAKYQVFR AELTGNLEIA
GVEHRLIVGV DSDKFENDQF ALRDRTTEQY INVFSPVYTA ANALANDFST QIDRVETQES
LGVFIQDQIS ITDKLDVRIG ARFDDYQQTM NNRLSESQSK QTESRVSPQF GIVYEASDTL
SLYAAYGENF RPLSGTDSNG DGFEPNQSTS AEAGIKFTLN DGALFGTVSI FKVEQDNLLV
VDDPTSFTYA AIGEAESQGI EIDINGEIAD GLTLWASYAY VDAKTKNAFF DGNFGYTIEA
GTDLLNVPEQ QLSLQLVQLL ELDGKDLEVG GGLVYVDKRN GYFGTDFTLP SYTTARAFIA
YDITKSISLR AEVDNLFDKD YYTNSFADAW VQPGTPRSFR VSASYHF
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