Gene Patl_3770 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3770 
Symbol 
ID4175550 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp4540393 
End bp4541679 
Gene Length1287 bp 
Protein Length428 aa 
Translation table11 
GC content47% 
IMG OID638056798 
Productbeta-lactamase 
Protein accessionYP_663324 
Protein GI109900069 
COG category[V] Defense mechanisms 
COG ID[COG1680] Beta-lactamase class C and other penicillin binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000344014 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCATGA CAATAAAAGC AACCGCTTTA CTCGCAATTG TATGCTGCTT TGGAGTCGCA 
AATGTTTCAA CGGTATGGGC CGGGGAAGAA CGTACGCTCC CCCCAAAAGC GACTCCCGAT
GAAGCTCTGA TTACCCATTG GCGAATGCCC GAAATAGAAA AACGGTTTAT GGATATCCCT
GAGTTAGATT CCCCTTACAT AGATACATCG CCCGTTGATT TAGGTGACGG TATCGCCGTA
GGCCAATTCA GCCATAAAGC TACCCATGCA ATTACCGATG AAGGCGATGA AGGTAACAAA
TCTATCGAAG AAGCGGCAAT AATAACACTC GCCAAAGAGC TGGCAGCAGG TGATCACGGT
AAATACGACA GTCTGTTGAT TGCTAAAGGT GGCACTTTGG TGTTTGAGTC ATACTACAAA
AGGGGCAGAG TCGATTTGCC TCATCCTCAA TCTTCGGCCA CCAAGAGTTA TACCTCATTA
GCCCTAGGCC GAGCGATTCA AATGGGATAT TTATCCATGG ACGATTTAGA TAAACCGGTA
ATTAGTTTTC TAAACGATAT CGACAGCACC AAGCTTGTTA AAGGCGCAGA AACCATCACG
CTACACCACG CATTGACTAT GACCACAGGT ATCGATATTT CTGAGGAGGG GTGGGATACC
ATGGCGACGA ACCTAAAGCG AGTTAAAGGG CAAGGTGAAA TACAAGCTAT TTTAGAAGAC
AGTGCGCCTG TCACCGAACA AACACAGGTT TTTAAATACG GTACAGGCCC TCAATTTGTA
ATGCAGGTGA TTGAGGCTGT AGTGCCTGGT TCAGCTGAAG CGTTTATCCG CACTGAGTTG
TTTGGCAAGC TAGGTATTAC AAACTACGAT TGGCGCTTAG CGCCCAGTGG TTTGCCTGAG
TCTGGATGGA AGGTAAGCGT GACCGCCCGA GATATGCTTA AAGTGGGGCT GCTCATTGAC
AACAACGGTA AATGGAATGG GGAACAACTT CTCCCTGAAG CGTATTTGCA ACGCGCCACC
AGCAGGCAAA TATTGACCGG AGATGACGAT ATTTACGGCG GCGGTGAGTT AGTATCAAAT
CAAGGTTATG GCTATTTTTT CTGGGGAACC GACTTGGCAC TAAAAGGTAA AAAGCACCAT
GCTTTTTCAG CCCAAGGAGG CGGCGGTATG TATATTCTGT TAGTGCCAGA CTTTGATCTT
GTGGTGGTGG TCACTGCCCA CGAGCGAGAA GATGTTACGC AGCAATTAAT AGCCGAGCGC
ATTTTGCCTT TACTTTCCAA GCCTTAA
 
Protein sequence
MTMTIKATAL LAIVCCFGVA NVSTVWAGEE RTLPPKATPD EALITHWRMP EIEKRFMDIP 
ELDSPYIDTS PVDLGDGIAV GQFSHKATHA ITDEGDEGNK SIEEAAIITL AKELAAGDHG
KYDSLLIAKG GTLVFESYYK RGRVDLPHPQ SSATKSYTSL ALGRAIQMGY LSMDDLDKPV
ISFLNDIDST KLVKGAETIT LHHALTMTTG IDISEEGWDT MATNLKRVKG QGEIQAILED
SAPVTEQTQV FKYGTGPQFV MQVIEAVVPG SAEAFIRTEL FGKLGITNYD WRLAPSGLPE
SGWKVSVTAR DMLKVGLLID NNGKWNGEQL LPEAYLQRAT SRQILTGDDD IYGGGELVSN
QGYGYFFWGT DLALKGKKHH AFSAQGGGGM YILLVPDFDL VVVVTAHERE DVTQQLIAER
ILPLLSKP