Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3770 |
Symbol | |
ID | 4175550 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 4540393 |
End bp | 4541679 |
Gene Length | 1287 bp |
Protein Length | 428 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638056798 |
Product | beta-lactamase |
Protein accession | YP_663324 |
Protein GI | 109900069 |
COG category | [V] Defense mechanisms |
COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000344014 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCATGA CAATAAAAGC AACCGCTTTA CTCGCAATTG TATGCTGCTT TGGAGTCGCA AATGTTTCAA CGGTATGGGC CGGGGAAGAA CGTACGCTCC CCCCAAAAGC GACTCCCGAT GAAGCTCTGA TTACCCATTG GCGAATGCCC GAAATAGAAA AACGGTTTAT GGATATCCCT GAGTTAGATT CCCCTTACAT AGATACATCG CCCGTTGATT TAGGTGACGG TATCGCCGTA GGCCAATTCA GCCATAAAGC TACCCATGCA ATTACCGATG AAGGCGATGA AGGTAACAAA TCTATCGAAG AAGCGGCAAT AATAACACTC GCCAAAGAGC TGGCAGCAGG TGATCACGGT AAATACGACA GTCTGTTGAT TGCTAAAGGT GGCACTTTGG TGTTTGAGTC ATACTACAAA AGGGGCAGAG TCGATTTGCC TCATCCTCAA TCTTCGGCCA CCAAGAGTTA TACCTCATTA GCCCTAGGCC GAGCGATTCA AATGGGATAT TTATCCATGG ACGATTTAGA TAAACCGGTA ATTAGTTTTC TAAACGATAT CGACAGCACC AAGCTTGTTA AAGGCGCAGA AACCATCACG CTACACCACG CATTGACTAT GACCACAGGT ATCGATATTT CTGAGGAGGG GTGGGATACC ATGGCGACGA ACCTAAAGCG AGTTAAAGGG CAAGGTGAAA TACAAGCTAT TTTAGAAGAC AGTGCGCCTG TCACCGAACA AACACAGGTT TTTAAATACG GTACAGGCCC TCAATTTGTA ATGCAGGTGA TTGAGGCTGT AGTGCCTGGT TCAGCTGAAG CGTTTATCCG CACTGAGTTG TTTGGCAAGC TAGGTATTAC AAACTACGAT TGGCGCTTAG CGCCCAGTGG TTTGCCTGAG TCTGGATGGA AGGTAAGCGT GACCGCCCGA GATATGCTTA AAGTGGGGCT GCTCATTGAC AACAACGGTA AATGGAATGG GGAACAACTT CTCCCTGAAG CGTATTTGCA ACGCGCCACC AGCAGGCAAA TATTGACCGG AGATGACGAT ATTTACGGCG GCGGTGAGTT AGTATCAAAT CAAGGTTATG GCTATTTTTT CTGGGGAACC GACTTGGCAC TAAAAGGTAA AAAGCACCAT GCTTTTTCAG CCCAAGGAGG CGGCGGTATG TATATTCTGT TAGTGCCAGA CTTTGATCTT GTGGTGGTGG TCACTGCCCA CGAGCGAGAA GATGTTACGC AGCAATTAAT AGCCGAGCGC ATTTTGCCTT TACTTTCCAA GCCTTAA
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Protein sequence | MTMTIKATAL LAIVCCFGVA NVSTVWAGEE RTLPPKATPD EALITHWRMP EIEKRFMDIP ELDSPYIDTS PVDLGDGIAV GQFSHKATHA ITDEGDEGNK SIEEAAIITL AKELAAGDHG KYDSLLIAKG GTLVFESYYK RGRVDLPHPQ SSATKSYTSL ALGRAIQMGY LSMDDLDKPV ISFLNDIDST KLVKGAETIT LHHALTMTTG IDISEEGWDT MATNLKRVKG QGEIQAILED SAPVTEQTQV FKYGTGPQFV MQVIEAVVPG SAEAFIRTEL FGKLGITNYD WRLAPSGLPE SGWKVSVTAR DMLKVGLLID NNGKWNGEQL LPEAYLQRAT SRQILTGDDD IYGGGELVSN QGYGYFFWGT DLALKGKKHH AFSAQGGGGM YILLVPDFDL VVVVTAHERE DVTQQLIAER ILPLLSKP
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