| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3769 |
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| Symbol | |
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| ID | 4175549 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4537842 |
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| End bp | 4540112 |
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| Gene Length | 2271 bp |
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| Protein Length | 756 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638056797 |
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| Product | transcriptional regulator, CadC |
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| Protein accession | YP_663323 |
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| Protein GI | 109900068 |
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| COG category | [K] Transcription |
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| COG ID | [COG3710] DNA-binding winged-HTH domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0208668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGAAC AATATTGGAT TGGTGACTTC TTTGTTAACT TGCCAAGAAA CCAAATAACG
CACAACGAAC ATACCCAAAC ACTGCCACCT AAAGCCCTCG CCGTTTTAAC CTACCTCGCT
AAGCATCAAG GCGATGTGGT AAGCCAAGAA GATTTACTGA ATCAGGTATG GAAAGACACA
GTCGTCTCGC CCAATTCTCT ACAGCGTTGT ATTGCGCAGC TAAGAAAAGC CTTCGGCGAT
GATGGCAAGG CACAAGGCCT GATTAAAACC CATGCTAAAA AGGGCTACAG TTTAGAGGCT
GCTATTCGCT GGGAAGATCA TCAAAAAAGG AATGTTGGTG ATAGTGTGAC ATTGGATAAA
AGCCCTCCTA ATCAACACGC GAAGCTCGGC ACCAATAAAG TCGTAAAAGC AGGGTTTAGC
GCCAAGCACA TCTTCGTATT AAGCTTATTT ACTGTGCTTG TGTTTGCGCT AGTGATTAGT
ATCACCAGTA CTCTATGGCC TTCCTCCGTA CATAATCCTT CGCCTGCTAG CCCACTGCTC
ATTGACGATA TTCGATTGCT TACATCAACC GATAACAGAG AGCTGGCCAG TGCGTATTCA
CCTGATGGGA AATTCATCGT ATTTCAGCGC TTTCCCGAGG TGATGTGCAC AAGCCATTTA
TGGGCAAAAA ACATCGAGAC TCAACAAGAG TTCCAACTGA CTCGTGATTT AGGCTCGTAT
GGTAATCTCG CTTTTTCTGA AGATGGCACT TCACTCATTT TTGTAAAACA GAACAACTGT
TCAGCGCCCG CCTTGCAGAA AAAGTGCTTT CTATTACAAC AGCTAGATTT TGAGCAAGCA
TTGCTATCGC CACAAACACC GACCACTTTA ATGGAATGTA AGCACACTGA CATTAAAAGC
CCAACATGGT TGAGTGCAAA TGATATTGCG CTTTTGCAAA AGGAGCAGGG GCGCTGGAAG
TTAATTCGCT ATTCTGTGAA AGCAGACAAA AGCGCATTAC TGTATGAGGT GAATAATGGC
AGCGTGGTGT CTTACGACTT CTCAAAAAAA TATAACGTCA TTGCGCTTAC CTCCGTGCAC
GAAAGCGGTA AACTCTATAT CGAAAAACTG ACGCCAGAGG GAGCTCTGCT CTCTAGTAAC
CCGATTAATT TTCGCGGCGA GATCCCGCAA TATGGCACTA TTTACCCCAA CTTTTCCCCG
ATAGAGGGGC GCCTAATATT TAGCACTGGC AAGCAACTGT TCACGGTATC GTTTGACGGT
GATATTAGCG CTATAAGCAT GCCACTTACC GATGCTATAG GTACGCCCTT ATTTCACCCC
AACGGTAAAA AGATGTTAGC CATTAAGGGG CATTATGACA GCGACATCGT ATCTGTCCCG
TTATCACAAT TCTCTTACTC TCGTATGCAA CAGACTGACA CTTTAGGTGC CACTGTTGAG
TATGAAACAG TCGTGCGCTC TATGCAGGAA GAAGACCGAG CAAAGTACCA ACCCAATGGA
AACCTTATTG CCTACTACTC TGAGGGGGAT GGCACATCAC AGGTATGGAC AAGCAACTTA
GCGCAGGGCA GTACTGCTTC ACGCCAGGAA GGTTTAGCCA GCACCGCTTC ATACAACGAC
TTTCCCCACA ATGGCGCACA CAATGCCGCA GACAACGATT ACACAAAACA GCGTAGCCAA
TTTCCTGCTA ATACCTATGT GCGAAACATA CTGTGGGACG CAGATGGCCA AAGCTTACTT
GTGAATGCGT CATCCCAACT AACACGCCTT TATTTAAACG GCGCAGAAGA AAGCATTTCA
CTGAGTTACC CAGTGAAAAG CTTATTCCAC TGGGACAGCG TGAATAAAAC GATTATCGCC
AATATTCTCT ATCGGGGAGT CAGTACTTTG GTAGAGCTGA ATCTCAGTAA CAGTGACTTT
AGTATTTTAA CCAATCACGA AGTCACGTGG GCTACAAAAA CCGATCGTGG CGAACTGATT
TATAAAGACA ATGCAGATAG GTTTTGGCTA TCCGGCGCAA TTGAAAATAC ACTTATACCC
GAACTGGCAA CACAAGGCAG CCATCAACAC TTCATCGTAA AAAATGACGT TATTTACGGC
ATAAATGACC AATATCAGCT TTGGAAGTAC ATGCTCGAAA CCGCCTCGTT CGAGGTACTT
GGCCAATTAC CCGATACGGT GGATTACATT ACCGATATAA ACGACAACGC CATACTAATA
ACACTTAGAG TGGCAGCAAG AAAAGACGTG GTAGAGCTAT CAATAGAGTA G
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| Protein sequence | MTEQYWIGDF FVNLPRNQIT HNEHTQTLPP KALAVLTYLA KHQGDVVSQE DLLNQVWKDT
VVSPNSLQRC IAQLRKAFGD DGKAQGLIKT HAKKGYSLEA AIRWEDHQKR NVGDSVTLDK
SPPNQHAKLG TNKVVKAGFS AKHIFVLSLF TVLVFALVIS ITSTLWPSSV HNPSPASPLL
IDDIRLLTST DNRELASAYS PDGKFIVFQR FPEVMCTSHL WAKNIETQQE FQLTRDLGSY
GNLAFSEDGT SLIFVKQNNC SAPALQKKCF LLQQLDFEQA LLSPQTPTTL MECKHTDIKS
PTWLSANDIA LLQKEQGRWK LIRYSVKADK SALLYEVNNG SVVSYDFSKK YNVIALTSVH
ESGKLYIEKL TPEGALLSSN PINFRGEIPQ YGTIYPNFSP IEGRLIFSTG KQLFTVSFDG
DISAISMPLT DAIGTPLFHP NGKKMLAIKG HYDSDIVSVP LSQFSYSRMQ QTDTLGATVE
YETVVRSMQE EDRAKYQPNG NLIAYYSEGD GTSQVWTSNL AQGSTASRQE GLASTASYND
FPHNGAHNAA DNDYTKQRSQ FPANTYVRNI LWDADGQSLL VNASSQLTRL YLNGAEESIS
LSYPVKSLFH WDSVNKTIIA NILYRGVSTL VELNLSNSDF SILTNHEVTW ATKTDRGELI
YKDNADRFWL SGAIENTLIP ELATQGSHQH FIVKNDVIYG INDQYQLWKY MLETASFEVL
GQLPDTVDYI TDINDNAILI TLRVAARKDV VELSIE
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