Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3726 |
Symbol | |
ID | 4175506 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 4489191 |
End bp | 4490510 |
Gene Length | 1320 bp |
Protein Length | 439 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638056756 |
Product | xylose isomerase |
Protein accession | YP_663282 |
Protein GI | 109900027 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2115] Xylose isomerase |
TIGRFAM ID | [TIGR02630] xylose isomerase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.658908 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTGAAT ATTTTAAAGA TATCCCTAAA GTAAAATTTG AAGGTACCAG TTCAGACAAC CCATTAGCAT TTCGCCATTA CAACCCAGAA GAACTGGTGC TAGGCAAGAG CATGAAAGAA CATTTACGCC TAGCGGCGTG TTACTGGCAC AACTTCTGTT GGGACGGCGC TGATGTATTT GGCGCAGGTA CGTTTAATCG CCCTTGGCTG CAAGCAGGTG ATGCCATGCA GCGCGCAAAA GAAAAAGCTG ACGTCGCGTT TGAGTTTTTC TCAAAGCTAA ATATTCCTTA TTACTGCTTC CACGATGTTG ATGTTTCCCC TGAGGGCAAC TCAATTAAAG AGTACATTAA CAACTTTGCT CAGATGACTG ACGTACTAGA AGCCAAACAA GAAGAAACGG GTCTTAAGTT GTTATGGGGC ACCGCAAACT TGTTCAGTAA CCCACGTTAC GCTAGCGGTG CTGCATCTAG CCCGAACCCT GAAGTATTCA CTTATGGCGC GACTCAAGTA ATGCACGCTA TGAATGCGAC TAAGCGATTA GGCGGTGAAA ACTACGTGCT TTGGGGTGGT CGTGAAGGTT ACGAAACCTT GCTAAATACC GATTTACGCC AAGAGCGTGA GCAACTCGGT CGTTTCATGA ACATGGTTGT TGAGCATAAG CATAAAATTG GCTTTAAAGG ATTATTGCTA ATCGAACCTA AGCCACAAGA GCCGACTAAG CACCAGTACG ATTACGACAC CGCAACTGTT TATGGCTTCT TGAAGCAATA CGGTTTAGAA AACGAATTTA AAGTGAACAT TGAAGCTAAC CACGCCACCT TGGCCGGCCA CTCGTTCCAG CATGAAGTCG CTACGGCTAT ATCACTTGGC TTATTTGGTA GCATCGATGC CAACCGAGGT GACCCTCAAC TAGGTTGGGA TACCGACCAA TTCCCGAATA GCGTTGAAGA ATTGTCATTG GTTATTTATG AAATTCTTAA AGCGGGTGGT TTTACATCTG GTGGCTTTAA CTTTGATACT AAGTTGCGTC GTCAAAGCTC AGATCCACAA GATATGTTCA TCGCCCACAT TGGCGGCATG GATCACTTAG CAATTGGCTT GAAAAAAGCC GCGCTGATGA TTGAAAATGA CTTCCTTGGT CAAGCTGTCA GCAAGCGTTA CGCAGGTTGG AACGGCGAGC TAGGTAAGGG TATTCAAGGA GGCGATTTCA ACCTTGAGTC ACTCGCTAAC CTCTGCGTAG ATAAGAACCT ACAACCTAAG CACGTCAGTG GCCAGCAAGA GTTATTAGAG AACAAGGTTA ATAACGTTTT ATACGGCTAA
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Protein sequence | MAEYFKDIPK VKFEGTSSDN PLAFRHYNPE ELVLGKSMKE HLRLAACYWH NFCWDGADVF GAGTFNRPWL QAGDAMQRAK EKADVAFEFF SKLNIPYYCF HDVDVSPEGN SIKEYINNFA QMTDVLEAKQ EETGLKLLWG TANLFSNPRY ASGAASSPNP EVFTYGATQV MHAMNATKRL GGENYVLWGG REGYETLLNT DLRQEREQLG RFMNMVVEHK HKIGFKGLLL IEPKPQEPTK HQYDYDTATV YGFLKQYGLE NEFKVNIEAN HATLAGHSFQ HEVATAISLG LFGSIDANRG DPQLGWDTDQ FPNSVEELSL VIYEILKAGG FTSGGFNFDT KLRRQSSDPQ DMFIAHIGGM DHLAIGLKKA ALMIENDFLG QAVSKRYAGW NGELGKGIQG GDFNLESLAN LCVDKNLQPK HVSGQQELLE NKVNNVLYG
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