| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3723 |
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| Symbol | |
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| ID | 4175503 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4483430 |
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| End bp | 4486141 |
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| Gene Length | 2712 bp |
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| Protein Length | 903 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638056753 |
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| Product | periplasmic sensor hybrid histidine kinase |
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| Protein accession | YP_663279 |
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| Protein GI | 109900024 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.803649 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTTTAGAA CCCTGAAAGC CCAGATACTG CTTGTTTCGG TAATATTAAT TCTTTTACTG
GTATCACAAG TATTTGTTAC TCGCAGCAAT CATAGCACCT TCGTAAACAG TTTAGATCTG
ACCCATCAAG CCGTTATAAA AGTGAGCTTG GTGCGAGAGC TTGAGCGAGA TGTATTAGAC
TTACAACGGA ATGTATTAAT ATATAAGGAT TCGGCTAGTA AATCTGCTAT TGCGCGTTTC
AATTCATTAA TTCAAAGTTC AATTGATAAT CTGGCAACAC TAGAGTCGCT AACCAGCAAA
GAAGAACAAG CTGATATCTA TCACGGCTTT ATTTCTAGAA TGCGTAATCA TATAGCCGAA
TACAAAGATA ATTTTTCAAA CGTAATTACT GGGCGCAGTA AGCGTGACAA GCTCTTTGAG
AAAGATCTAA CCGTTGATAT CAATGACATA TTAGCGTCTT TATCCCAAGG GGATAGTTCT
ACCTCTCTCA GTTTATCACG CACTAAATAC CACATCACTC GGGCGGAAAA CGTCACCTAT
CAATATCTGC TCAACCCAGA TTACCAATTG GTAGAAAGTT TCAGAGGTGA GTTAAGTCAA
GCGAAGGAGA GTTTACTACA AAGTGCTTTA CCGAACGAAA TGACATCTGC CTTAATCACA
AAGCTAGACA AAGTAGACGG TGAGTTTTTA CAACTCACCA ATGTCACAAG TGGGTATTTG
TTTTTAGTTA ACGTGGTTAT GGCGGGCTCA GCTAACGAAT TTCTATTTAT GGCCAGAGAG
CTCAATCGCC TTGTGACCTC AAAATTGGGC GACACCAATG AGCAAGTAAA AAGTAACATT
GAAAAGAATC AAATAAGCAG TGATTTATTT TCTATTATCG GGATTTTCCT TGCCTGTATC
ACAGCTTACT TTTTAGCGTC TCGGATCATG ATCCCCATCA ACACCATTAC GGAGGTATTT
AAAAAGCTTG CCAAAGGTGA AGACGTTGAT GCCATTCCAG GGATCACTAG GCACAACGAA
ATCGGTCAAT TAGCCAACGC AGCGGATGTA TTTCACGAGA AAAACAAGCA GACATCCGCC
TTACTTGCTC AGGCTCAGCG TCTTAACAGC GAGCAAGAAA TGCTAAATGC GGAATTAGTT
GAGTCAAAAC ACAAAGCGGA ACAAGCCACG GTATCTAAAA GTATGTTCTT GGCGAATATG
AGTCACGAAA TACGCACCCC AATGAATGGC ATAATCGGTT TGTTAGATGT CGTTATGAAA
AGTGATTTGA CACCCACCCA GCGCCAGCAT TTGAATAAAG TAGTGTACTC AAGCCAGATA
TTAATGAGCC TGATCAACGA TATTTTAGAC TTTTCAAAAG TTGAAGCGGG CAAACTAGAT
ATTGAACAAG TGGAGTTCTC CCTCAATTCT GTGTTTGCTA ACTTATTGAC GAATATTTCT
GCTCGGGCAC AAGAGAAAAA TCTCAATGTG CGATTTATAT GTGATCCCAA TATTCCCCCA
ACGCTAATAG GCGACCCTTT GCGCATCAGC CAAGTGTTAC TGAACTTAAC CAGTAATGCC
GTCAAATTCA CTCGTAATGG TTCAATTACC ATATCTATAA CCCATGATGT TATACCCAAC
AGTGACAAGG TATTGCTCAA GGCTCGTGTG AAGGATACAG GCATTGGCAT GTCTAAAGAG
CAGCTAGGAA AAGTCTTTGA GTCATTTACC CAGGCCGATG GCACCACCAG CCGTGATTTT
GGTGGTACAG GTTTGGGCTT AACGATAGTG AAGCAGCTGG TGCATCTTAT GGGGGGCAAT
GTCACCGCAC AATCAGAGCT CAATGTTGGC AGTACATTTG AGGTGACATT CACTGTAATC
GTCCAATCTG ATGAGCAGCA TATTTTTCAT ATTGCGCCTC AGCCTCAGCG CAAAATGTAT
TATTTCAGTA AGACGCCCAA AGGCTTGATT GAACAGCAGT ATTTCAACAA TGTCGAAATG
GATTATCATC ACTTCCCGCA TATGCAGCTT GAGAAGATGT TGCCTGAAAT AACAGAGAAT
GACATTGTTA TCATAGACGT GGCGGACTTA GCTGAACACA AAGCCATAGG TCCGTCGATA
CAGAAACTGA AAGACGATGG TAGAAATGTT GGCTTTATTA CTGATACTCA ACCGAGTAAT
TTGCCACAGA AGCTGATTAA TATTTGGAGC TTCCCTTGTT TAACCCACCC TTTTACACCT
GGTCACTTGG TCTCGTTTAT TCATTCACTG CTGAATGAAG AGCAGTTCGT ATCTGACATC
CCTAGCCCGC AGTTCAATGA GCAAGTGGAG TACGACGGTC ATATTTTGCT GGTAGAAGAC
AATAGCATTA ACCAGGTTGT TACCGGAGAA ATGCTGCGCG TGCTTGGCAT CACGTTCGAT
ATTGCTGAAA ATGGCCAGCA AGCGGTCACA AAAGTGATTA ATTCCGCGCA TTATGACGTG
GTGTTAATGG ACATACAAAT GCCAGTCATG GACGGCTATC AGGCCACCAT TGAAATACGT
CAACAAGGTC TTCTTGACCT GGTCATATGT GGATTATCCG CGAACGCAAT GAAAGAAGAT
TTTGTACAAG CCAAAGAAGT GGGCATGAAC GAGTATCTAA CCAAGCCGTT AAAGTTAGTC
GCCTTAGAAG ACATGCTCAG TAAGTATCTA CCCGCTAAAA TAATGGTAAA AGCACAAACA
GAAAACGAAT AG
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| Protein sequence | MFRTLKAQIL LVSVILILLL VSQVFVTRSN HSTFVNSLDL THQAVIKVSL VRELERDVLD
LQRNVLIYKD SASKSAIARF NSLIQSSIDN LATLESLTSK EEQADIYHGF ISRMRNHIAE
YKDNFSNVIT GRSKRDKLFE KDLTVDINDI LASLSQGDSS TSLSLSRTKY HITRAENVTY
QYLLNPDYQL VESFRGELSQ AKESLLQSAL PNEMTSALIT KLDKVDGEFL QLTNVTSGYL
FLVNVVMAGS ANEFLFMARE LNRLVTSKLG DTNEQVKSNI EKNQISSDLF SIIGIFLACI
TAYFLASRIM IPINTITEVF KKLAKGEDVD AIPGITRHNE IGQLANAADV FHEKNKQTSA
LLAQAQRLNS EQEMLNAELV ESKHKAEQAT VSKSMFLANM SHEIRTPMNG IIGLLDVVMK
SDLTPTQRQH LNKVVYSSQI LMSLINDILD FSKVEAGKLD IEQVEFSLNS VFANLLTNIS
ARAQEKNLNV RFICDPNIPP TLIGDPLRIS QVLLNLTSNA VKFTRNGSIT ISITHDVIPN
SDKVLLKARV KDTGIGMSKE QLGKVFESFT QADGTTSRDF GGTGLGLTIV KQLVHLMGGN
VTAQSELNVG STFEVTFTVI VQSDEQHIFH IAPQPQRKMY YFSKTPKGLI EQQYFNNVEM
DYHHFPHMQL EKMLPEITEN DIVIIDVADL AEHKAIGPSI QKLKDDGRNV GFITDTQPSN
LPQKLINIWS FPCLTHPFTP GHLVSFIHSL LNEEQFVSDI PSPQFNEQVE YDGHILLVED
NSINQVVTGE MLRVLGITFD IAENGQQAVT KVINSAHYDV VLMDIQMPVM DGYQATIEIR
QQGLLDLVIC GLSANAMKED FVQAKEVGMN EYLTKPLKLV ALEDMLSKYL PAKIMVKAQT
ENE
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