| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3717 |
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| Symbol | |
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| ID | 4175497 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4478304 |
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| End bp | 4479347 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638056747 |
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| Product | twitching motility protein |
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| Protein accession | YP_663273 |
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| Protein GI | 109900018 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGATATTA CCGAACTTTT AGCCTTTAGT GTCAAAAATA ACGCATCAGA TTTACACCTG
TCAGCAGGCC TACCGCCAAT TATTCGCGTT GATGGAGAGA TGCGTCGGTT AAATGTTCCC
GCCTTAGATC ACAAGCAAGT TCATGCCCTG ATATACGAAA TCATGAACGA TAACCAACGC
AAAGAGTATG AAGAAAATTT AGAGACCGAT TTCTCATTTG AAGTGAAAGA CTTATCGCGT
TTTCGGGTTA ATGCGTTCGT GCAAAATCGA GGTGCAGCTG CTGTACTGAG AACCATTCCA
AGCAAAATTT TAAGCTTAGA TGATTTAGGT GCACCGCAGA TATTCAAGGA CATTATTAAT
CAGCCTACTG GGATTGTATT GGTCACTGGA GCGACTGGTT CGGGTAAAAG TACCACGCTT
GCGGCCATGG TTGATCATAT AAACCGGCAC AAGCGGGAGC ATATCCTGAC CATTGAGGAT
CCCATCGAGT TCGTGCATGA AAATAAGCTG TGCGTGATGA ATCAACGTGA AGTGCATCGC
GATACACACA GTTTCAGTAA TGCGCTGCGC TCGGCTTTGC GTGAAGATCC AGATGTGATC
CTTGTTGGCG AGCTGCGCGA CCTTGAGACT ATACGGTTAG CGATATCAGC TGCTGAAACA
GGTCATTTAG TGTTTGGTAC GCTGCATACC AACTCAGCAC CAAAAACCAT AGACAGACTG
ATTGACGTGT TCCCTGCAGA AGAAAAGTCC ATGGTGCGCT CTATGTTGTC AGAATCATTA
CGGGCGGTTA TTTCACAAAC CTTATTGAAA AAAGTAGGCG GTGGACGTGT TGCCGCCCAT
GAAATCATGC TTGGTATACC CGCTATACGT AACCTTATTC GTGAAGATAA AGTGCCGCAA
ATGTACTCTG TCATGCAAAC CAGCCAAGCT CATGGCATGC AAACTATGGA TCAGTGCTTA
CAAAAAATGG TCGCTCAAGG TTTGATTACC AATGAAGATG CCGCTTCACT ATCGATTGAT
AAGAAGCCGG GCATGAATTT TTAA
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| Protein sequence | MDITELLAFS VKNNASDLHL SAGLPPIIRV DGEMRRLNVP ALDHKQVHAL IYEIMNDNQR
KEYEENLETD FSFEVKDLSR FRVNAFVQNR GAAAVLRTIP SKILSLDDLG APQIFKDIIN
QPTGIVLVTG ATGSGKSTTL AAMVDHINRH KREHILTIED PIEFVHENKL CVMNQREVHR
DTHSFSNALR SALREDPDVI LVGELRDLET IRLAISAAET GHLVFGTLHT NSAPKTIDRL
IDVFPAEEKS MVRSMLSESL RAVISQTLLK KVGGGRVAAH EIMLGIPAIR NLIREDKVPQ
MYSVMQTSQA HGMQTMDQCL QKMVAQGLIT NEDAASLSID KKPGMNF
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