| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3716 |
|---|
| Symbol | |
|---|
| ID | 4175496 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4477159 |
|---|
| End bp | 4478271 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638056746 |
|---|
| Product | twitching motility protein |
|---|
| Protein accession | YP_663272 |
|---|
| Protein GI | 109900017 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACTTAA CTCCTTACTT GCAAGAAATG ACTGATTTAA ATGCGTCTGA TTTGTTTATA
ACGGTAGGCA TGCCAATCAG CGCAAAAATT AACGGTCAAC TTACGCCAAT AGGCGGCAGT
AAATTGGATG AAGACGGTGC TTGGGGCTTA GTGCAAGATG CTATGACCGA TACGCAAAAA
GAGCAATTTG TGCAAACCAA AGAGTGCAAT TTTGCGATTG CAAGAGAGGG GATCGGGCGT
TTTCGTTGCA GCGCATTTTG GCAACGTGAT ATGCCGGGCA TGGTTATTAG GCGAATAGTG
ACCGACATTC CTAAAGCAGC TGATTTAGGA CTGCCTGCTG TGCTCAAAGA TATTATTATG
AGTAAACGCG GTTTGGTGTT GTTTGTTGGT GCCACTGGTA CCGGTAAGTC TACGTCCTTG
GCTGCCTTAA TTGGCCATCG CAATCATCAT TCCCGAGGGC ATATTCTCAC CATTGAAGAT
CCAATTGAAT TTGTTCACGA ACATCAAAGC TGTGTTGTGA CCCAAAGAGA AGTGGGTATT
GATACCCAAT CATTTGATGA CGCATTAAAA AGCTCTTTGC GCCAAGCCCC AGATGTTATC
TTGATCGGTG AAATCCGCTC CATGGAAACC ATGGAATATG CAATGTCATT CGCCGATACC
GGGCATTTAT GTGTGGCTAC GCTACATGCT AATAACGCCA ATCAGGCCAT TGAGCGTATT
ATGCATTTGG CGCCACCAGA GCAGCATGAA AAACTGCGTT TTGATTTGAG CTTGAATATG
CGTGCGGTCA TAGCACAGCA ATTGGTACCA ACGGTCGATG GCAAAGGACG CGTGGCCGCC
ATTGAAATCT TGCTAAATTC CCCTCTGGTG ACTGACTTGA TCCAGCGAAA CGAAATTGGC
GGCTTAAAAG AGGCCATGCG TAAAGGCAAA GAAATGGGCA TGCAAAGTTT TGATATGGCA
CTTTATACCT TGTACCAAGA ACAAAAAATC AGCTTGGAAC AAGCAATACA CCATGCCGAT
TCACCAAATG ACCTGCGCCT GATGATTAAA CTTGATTCTG ATCAAGGTGA CGCATTAGGT
TCGTTGTCAA ATGTATCTAT CGATATGGAT TAA
|
|---|
| Protein sequence | MDLTPYLQEM TDLNASDLFI TVGMPISAKI NGQLTPIGGS KLDEDGAWGL VQDAMTDTQK
EQFVQTKECN FAIAREGIGR FRCSAFWQRD MPGMVIRRIV TDIPKAADLG LPAVLKDIIM
SKRGLVLFVG ATGTGKSTSL AALIGHRNHH SRGHILTIED PIEFVHEHQS CVVTQREVGI
DTQSFDDALK SSLRQAPDVI LIGEIRSMET MEYAMSFADT GHLCVATLHA NNANQAIERI
MHLAPPEQHE KLRFDLSLNM RAVIAQQLVP TVDGKGRVAA IEILLNSPLV TDLIQRNEIG
GLKEAMRKGK EMGMQSFDMA LYTLYQEQKI SLEQAIHHAD SPNDLRLMIK LDSDQGDALG
SLSNVSIDMD
|
|---|
| |