| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3714 |
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| Symbol | |
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| ID | 4175494 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4475869 |
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| End bp | 4476774 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056744 |
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| Product | tyrosine recombinase XerD |
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| Protein accession | YP_663270 |
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| Protein GI | 109900015 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGACCAGTA AGCTTGATAA CCATGAGATA ATTGAACAAT TCTTAGATAC GATTTGGTTA
GAAAAAGGGT TGAGTGAAAA CACCCTAGAT GCCTATCGCA GTGACCTGAC TAAATTCAGC
GACTTCTTGA GGGCGCAATC CTCTGTCGTT AATTTGCTTG ATATTCAAAC TGAGGATATT
AATCAGTACA TGGCCGAGCG TTTTGACAAT GGTTTGTCTG AGCGCAGTAG CGCTCGTTGT
TTAAGTAGTT TACGGCGTTT TTCAGGCTAT ATGTTGGCAC ACGGGTTACG TGAAGATGAT
CCCGTCAGCC GTATGCAAAA CCCTAAGCTC AGTAAACCCC TGCCTAAAAC GCTTTCAGAA
CAGCAAGTGG ATGATTTACT CAACGCACCA CAAACCGACG ACCCCATTCA ATTGCGCGAC
AAAGCCATGC TTGAGGTCTT GTACGCTACG GGTTTGCGGG TCACTGAGTT AGTCACATTA
CGCGTCGGGC AATTGAGTAT TTCACAAGGT GTGGTCAGAG TAACTGGCAA AGGTAATAAG
GAACGCCTGG TGCCGCTAGG GGAAGAAGCA TTGGATTGGC TCACTACTTA CATGAAAGAG
GCGAGAGGAG CACTGCTGCG AAATGAAAGC GACGTGTTGT TTCCCAGCAA TCGCGGCACG
ATCATGACGC GACAGACGTT CTGGCATCGT ATTAAATTTC ACGCCACGCA AGCCAACATC
ACCAGTGATT TATCGCCACA TACCTTGCGC CATGCTTTTG CTACCCATCT GTTGAATCAC
GGTGCTGATT TACGTGTCGT GCAAATGTTA TTAGGTCACA GTGATTTATC CACCACGCAA
ATTTACACCC ACGTGGCCAC TGCTCGTTTA CAGGAATTGG TTGCAGCACA TCACCCTAGA
GGATAG
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| Protein sequence | MTSKLDNHEI IEQFLDTIWL EKGLSENTLD AYRSDLTKFS DFLRAQSSVV NLLDIQTEDI
NQYMAERFDN GLSERSSARC LSSLRRFSGY MLAHGLREDD PVSRMQNPKL SKPLPKTLSE
QQVDDLLNAP QTDDPIQLRD KAMLEVLYAT GLRVTELVTL RVGQLSISQG VVRVTGKGNK
ERLVPLGEEA LDWLTTYMKE ARGALLRNES DVLFPSNRGT IMTRQTFWHR IKFHATQANI
TSDLSPHTLR HAFATHLLNH GADLRVVQML LGHSDLSTTQ IYTHVATARL QELVAAHHPR
G
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