| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3707 |
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| Symbol | |
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| ID | 4175487 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4468478 |
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| End bp | 4470640 |
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| Gene Length | 2163 bp |
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| Protein Length | 720 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638056737 |
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| Product | (p)ppGpp synthetase I, SpoT/RelA |
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| Protein accession | YP_663263 |
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| Protein GI | 109900008 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000687808 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTGCTA TCCGTAAAGT TCATGAGTCC AAACGGCCCC CTTTCGATGA ATGGTTAGAT
TCACTGTCCC TTTCTGATGT GTGTAAGCAT AAATTACGGG AAGTGTCCGA CACCCCAGAG
ATATTGCTTG TGGGTCAAGA AATGGTGGAA ATTCTGCATG AATTACACAT GGATGATGAG
ACGCTTCAAG CGTCGCTTGT CTACCCCTAT TGCCAAACTC ATGAATTAAC TGAAGAGCAA
ATTGAAGAGC GTTTCGGTAC GGGCATTCAG AAGCTCATTA CTGGCGTTAG GCGTATGGAC
GCCATCAAGT CTTTACATAC TAGAGCCAAC AGCGCTCGTA AAAATGATGA AGAGCAAATA
GATAACGTAC GACGCATGCT GCTGGCTATG GTCGAAGATG TGAGAGCCGT CGTCATTAAA
CTGGCTGAGC GAATTTGCGC CTTACAACAA GTTAAAAATG AGGACGAAGA AACTCGGGTT
TTAGTCGCTC GTGAATGCTC CAATATTTAC GCACCACTGG CCAACCGATT GGGGATAGGA
CAATTGAAAT GGGAGCTTGA AGACCTCTCG TTTCGGTATC TGCGCCCAGA AACATACATG
CAAATAGCCA ATTTATTGGA TGAGCGACGC ACAGACCGTC AACAATATAT TGAAGATTTC
GTAGAGGAAT TGCAGGCAGC GTTAGATGCA CAGCATATCA AGGCGAAAGT GTACGGGCGA
CCTAAGCATA TCTACAGCAT CTGGAAAAAG ATGCAGAAGA AGCACCTTAG CTTTGAGCAG
TTATTTGATA TTCGTGCCGT GCGGGTGATC GCCGATCGAT TACAAGACTG TTACGGGGCA
TTAGGTGTAG TGCACTCCAA TTGGCAGCAT ATACCCCGTG AATTTGACGA TTATATCGCA
ACGCCAAAAC CCAATGGTTA TCAATCGATT CATACCGTGG CGCTAGGTAA AGAAGATAAG
ACCATTGAGA TACAAATTCG CACAGCGCAA ATGCATCAAG ACGCAGAGCT AGGTGTTGCT
GCTCACTGGC GCTACAAAGA AGGTACAAGT AGCAGCCGCT CAGGTTATGA AGAGCGTATC
AACTGGTTGC GTAAAATCCT GTTATGGCAA GAAGAAGTAG CTGAATCCGG CGACTTAGTC
GAGGAATTGC GTAGTCAGGT ATTCGATGAT CGTGTTTATG TTTTTACGCC CAAAGGCGAT
GTTGTCGATT TACCACTTGG TTCTACCCCA TTAGACTTCG CTTATTATAT TCACAGTAAT
GTGGGGCACA GGTGTATTGG GGCGAAAGTG GGTGGGCGTA TAGTGCCATT TACCTACGAA
TTACGTACGG GTGATCAGGT CGATATTTTG ACCGGTAAGC AGCTCAACCC CAGCCGCGAC
TGGATGCACC CTGGACTTGG TTACGTTCAT TCATCCCGTG CCAGGGCGAA AATTCATACC
TATTTTAAGA AGCAAGACAG AGATAAAAAC TTAGCCGCGG GTAAAGAAAT ATTTGAGCGA
GAATTGCAAA AAGCCGGTAT TGACAGCAAA GACATTGCAC AGGCATGTAC CCGCTATAAC
ATGCATACAG TAGACGATTT GTATGCAGCA ATTGGTGCGG GAGATATTCG CTTAATGCAA
GTGGTGCATT ATCTGCAGCA ACTGCATGTG CCACCAACCG AAATTGATCC ACGGATTAAA
CCTAAAAAAC CTCAGTCGAG TAAGTTTAAA AAAGATACCG TTGTGGTGGA AGGGGTAGGA
AATCTGATGA CGCAGATTGC TGGTTGTTGC CAGCCCTTAC CGGGGGAAAC CATTCAAGGT
TATATCACTC AGGGCCGCGG CGTCAGTGTA CATAGAGAAG ATTGCGAACA ACTCAGTCAC
TTATTAGAGC AACATCCTGA ACGAGAGATT GATGTGGACT GGGCAAGTAA TATCAATGCC
TCTTTCCAGA CTTATATTCA GGTGTTTTGC AGTGACAGAG ACGGTTTATT ACGGGATATC
ACGACTGTAC TGGCCAACGA AAAAGCTGGG TTACTAGGGG TCAATAGTGC AAGCGATGTG
AAATTCGGCC TCGCACGGAT TTCCCTAAGA TTAGAGCTTA AAGACCTGCA GGGGCTGTCA
CGAGTGATAA GTCGTATTGA AGGGATAAAA GGTGTGTCAA TGGTTCAGCG AACAGACAAC
TAA
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| Protein sequence | MVAIRKVHES KRPPFDEWLD SLSLSDVCKH KLREVSDTPE ILLVGQEMVE ILHELHMDDE
TLQASLVYPY CQTHELTEEQ IEERFGTGIQ KLITGVRRMD AIKSLHTRAN SARKNDEEQI
DNVRRMLLAM VEDVRAVVIK LAERICALQQ VKNEDEETRV LVARECSNIY APLANRLGIG
QLKWELEDLS FRYLRPETYM QIANLLDERR TDRQQYIEDF VEELQAALDA QHIKAKVYGR
PKHIYSIWKK MQKKHLSFEQ LFDIRAVRVI ADRLQDCYGA LGVVHSNWQH IPREFDDYIA
TPKPNGYQSI HTVALGKEDK TIEIQIRTAQ MHQDAELGVA AHWRYKEGTS SSRSGYEERI
NWLRKILLWQ EEVAESGDLV EELRSQVFDD RVYVFTPKGD VVDLPLGSTP LDFAYYIHSN
VGHRCIGAKV GGRIVPFTYE LRTGDQVDIL TGKQLNPSRD WMHPGLGYVH SSRARAKIHT
YFKKQDRDKN LAAGKEIFER ELQKAGIDSK DIAQACTRYN MHTVDDLYAA IGAGDIRLMQ
VVHYLQQLHV PPTEIDPRIK PKKPQSSKFK KDTVVVEGVG NLMTQIAGCC QPLPGETIQG
YITQGRGVSV HREDCEQLSH LLEQHPEREI DVDWASNINA SFQTYIQVFC SDRDGLLRDI
TTVLANEKAG LLGVNSASDV KFGLARISLR LELKDLQGLS RVISRIEGIK GVSMVQRTDN
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