Gene Patl_3703 details

Gene Information

• Locus tag: Patl_3703
• Symbol: rplM
• ID: 4175483
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: -
• Start bp: 4465706
• End bp: 4466134
• Gene Length: 429 bp
• Protein Length: 142 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 638056733
• Product: 50S ribosomal protein L13
• Protein accession: YP_663259
• Protein GI: 109900004
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0102] Ribosomal protein L13
• TIGRFAM ID: [TIGR01066] ribosomal protein L13, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.000000271958
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAACTT TTGTTGCAAA GCCAGAAACG GTAAAACGTG AATGGTATGT GGTAGACGCC 
GCAGACAAAA CACTAGGTCG TTTAGCGACT GAAATTGCTA GCCGTTTACG CGGAAAGCAT 
AAGCCTGAGT ACACACCTCA TGTGGACACA GGGGATTACA TTGTTGTGAT CAACGCAGAG 
AAAGTAGTTG TTACCGGCAA CAAAGCCAAA GGTAAAATGT ACTACTCTCA CACTGGTTAC 
CCAGGCGGTC TTAAAGAGAC TAACTTTGAG AAGTTACAAG CCTTCAAACC AGAGATGATC 
ATTGAAAAAG CGGTTAAAGG TATGTTGCCA AAAGGTCCTC TTGGACGCGA TATGTTCCGC 
AAAATGAAAG TCTTCGCTGG TCCTGAGCAT AAACACGCTG CTCAACAGCC TCAAGTCTTA 
GACATTTAA 

 

Protein sequence

MKTFVAKPET VKREWYVVDA ADKTLGRLAT EIASRLRGKH KPEYTPHVDT GDYIVVINAE 
KVVVTGNKAK GKMYYSHTGY PGGLKETNFE KLQAFKPEMI IEKAVKGMLP KGPLGRDMFR 
KMKVFAGPEH KHAAQQPQVL DI