| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3699 |
|---|
| Symbol | |
|---|
| ID | 4175479 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4462410 |
|---|
| End bp | 4463144 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638056729 |
|---|
| Product | cytochrome c1 |
|---|
| Protein accession | YP_663255 |
|---|
| Protein GI | 109900000 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2857] Cytochrome c1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.201159 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAGT TAATACTCGT TTTAGCATTT TTATTGCCAA ATGCAGTATT CGCAGCAGGC
GGCGGTGCTC ACTTAGACAC CGCTGACTAC GACTTAACAG ACAAGGCATC GTTGCAAAAC
GGCGCCAAGA TCTTTCAGAA CTACTGTTTG GGTTGTCACC AAATGCAGTA CCAACGTTAT
CAGCGTGCGT TCGAAGATTT AGGTATCCCT GTTGAGCTTG GTCAAGAGAA CTTACAGTTC
ACAGGCGAAA AGCCCGGCGA GTATATTAAA AATGGTATGC CTGCTGATGC TGCAGCTAAG
TGGTTCGGTG CGCCGCCTCC AGATTTGACT CTGGTAGCTC GTGTACGTGG TGCTGATTGG
TTGTATACCT ATCTACGTAC GTTCTACGTC GACGAGAGTC GTCCGTTTGG TGTGAATAAC
CTAGTGTTCC CTGAAGTGGG TATGCCACAT GTATTGCAAG AGTTGCAAGG TGTTCCTCGC
AAGACGACTG AAGAGCATAT GGTCGACGGC GAAATGGTCG AACGCTATGT AGGTATCAAA
TCTGATGGTT CTGGGGAATT GAGCCCAGAA GAATATGACG GTGCCGTTTT GGACTTAGTG
AACTACCTGG TTTACACAGG TGAGCCTTCA CGCTTAGAGT CTGAGAGTAT CGGTCGCTGG
GTCTTAATAT TCTTGTTGGT GTTCTTCGTA CTTATTTACT TACTGAAGAA AGATTATTGG
AGAGATGTGC ATTAA
|
|---|
| Protein sequence | MKKLILVLAF LLPNAVFAAG GGAHLDTADY DLTDKASLQN GAKIFQNYCL GCHQMQYQRY
QRAFEDLGIP VELGQENLQF TGEKPGEYIK NGMPADAAAK WFGAPPPDLT LVARVRGADW
LYTYLRTFYV DESRPFGVNN LVFPEVGMPH VLQELQGVPR KTTEEHMVDG EMVERYVGIK
SDGSGELSPE EYDGAVLDLV NYLVYTGEPS RLESESIGRW VLIFLLVFFV LIYLLKKDYW
RDVH
|
|---|
| |