| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3686 |
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| Symbol | |
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| ID | 4175466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4446550 |
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| End bp | 4449309 |
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| Gene Length | 2760 bp |
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| Protein Length | 919 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638056716 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_663242 |
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| Protein GI | 109899987 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00016445 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAT CATACATCTG GTCGGCAGTA AAAACCGCCC TATTAGTACC TACTGTTGCT
GGTTTATCTA TGCAAGCAAC AGCACAAGAG GCAAGCGACG ATAGTAACCT TGAAGTGATT
CAGGTTCGCG GCATTGTCAG CAGCTTAAAA CGCGCCATGT CTGACAAAAA AGAAGCACTT
ATTGTTTCTG ATGGCATTGC AGCCGAAGAT TTGGGCAAAT TCCCAGACTT GAACGTGGCT
GAATCTTTAC AGCGGATCAC GGGTGTTTCA ATTGACCGTA GTGGCGGTGA AGGCCAAGCT
GTAACAGTTC GTGGTTTCGG CCCACAATTT AACACGGTAC TGGTAAATGG CCGTCAACTC
GCCACGGATA GTGGGGGTCG TGAGTTTAAC TTTGACGTGC TTGCGGCAGA TCAAATTACC
GGTGCTGACG TTTATAAAAG TACTCGTGCA GACCTTCAAG AAGGGGGCAT TGGTGCAACG
ATCAATGTTT CTACTGCTCG TCCATTTGAT TACGAAGGCT TTCAGCTAAT CGGTTCTGTA
AAAGGTATGT ACGAAACCCT TTCAGAAGAA ACGTCGCCCT CAGCTTCTTT CCTTGTAAGC
AATACATTCA ATGATGACAA AATGGGCGTG TTATTAGCTG TTTCTCGTCA AGAGCGTGAC
ATCCAAATTA ACACAGTGGG TACGGCAGGC TGGCGCCCTG GTCAAACGAT TTCCAACCGC
GATGATGGCG TCTTGTTCAC CAATGCCTAT ATTCCGCGTA ACTGGGATCA GGCCATTGAC
CAACAAGAGC GTACGCGTAC TAATGCGAGT TTGGTGTTCC AATTTGCTCC ATCGGATGAA
GTGAACATTA CCCTTGATGG TTTTGTGTCT AAATTTGAAG TAGATTCACA GGTTACCGAT
CTAGCGGCTT GGTTTGAACC AGATCGTGTA GGCAGTGCAA CTATTGATGA GGCAACCGGT
ACTTTACTAA CGTTTGATCA ACAAATTGGT CTTCACGGCG GTAGCGGTGA CCCTGCATCA
GATTTCGTAT CTCACACGCG TAATTCACGT GACTCACAAA GCGATGGTTT CGGCTTAAAC
GTAGAGTGGG ATATTACTCC TCAGCTCAAA GGTACATTTG ATGTGTCGAC TTCATCTGCC
GAAAACGATC GTGCAGGTAA AGACCGATTC AACGTAGTGG GTATCATCAA TAACTACGCA
TTCGATGGCA CTAGCAGTGT ACCGTCAGTG TCTCATGATG GATTTGGTGG GGACTCGCTA
CCTGATGCCA GTCGTGCACG TTTGCACTAC AACGAAAAAG GCCTGACATT CACCGATGAA
GATGAAATCA ACGAGTTTAA AGCCGATTTC GTCTACTTAG CAGATTCAGA TGTATTTCAA
AAAGCGCAGT TCGGTGTATA CCGTCAAGAG CGTGAAAAAT CAGCATTTCA AATTTATGGT
AGCCAATGTG CATTCTGTGG TTACGGTACA CCGGCACCAG TTGATACCAT TGGATTTGAA
GCTTTTACAG CGAAGAATTT CTTCCCTGGC TACCCTGAAA CTTTCTATAG TTATGACGGC
GATGCGTACA TCGATTTCCT AGCAGAATCA GGCAATCCAA TTGAGCCTAC GCTACAGAAC
AACCGTTATA CAATTAACGA AGACATCACT AGCTTATATC TAGACTTCAC CTTTATGTAT
GACATCGGTG ATATGCCTCT GGCAGTCAAC GTAGGTGCGC GATATGCTGA AACAGACATC
AGTGTTGCTG CAGTACAAAG TTTCATTAAA GACGTAGTGC CTACCACCGA TTTGACCTTA
TTCGCTAATG AGTTCGGTCC AGCCACTGAT ATTCAGCAAG GTGACAGCTA CTCAAATCTT
TTACCAAGCG TTAATGTAAA GCTAGACCTC ACCGACGAAA TGGTTTTACG TTTCTCAGTG
TATGATTCAA TGACACGTCC AACTATGTCT CAGTTGTCTC CAGCTACCGT ATTTAATGAG
CCTCGTCGTC AGAATTTAAC AGCCAGTGGT GGTAACCCGT CGCTTAAGCC GTTTACCTCT
GAGAACTGGG ATTTATCATT CGAATGGTAT TACGCTGATG CAAGTTACTT CACGTTTGCA
GTCTTCAGCA AAGAAGTAGA AGACTTTATC GTGACATTGA CGGGCGAGGA GACATTCACG
TTCTCAGATC GTACATCCGC TGATGGCTTC AGATGTAACA ACGATACAGG CGAAAATTTG
TGTGCAGTTG GTTTAGCACT TGATGATACT CGTCCTGATT ATGACGTAGT GGCGAACACT
GAAGAATTGA ACGGTGCAAG TGAAGTTTAT ACTGTTAGTC GTCCGCAAAA CACGGAAACA
ACCAAAGTAA CAGGCTACGA AGTCGCAGTG ACTCACGTAT TCGAAAATGG CTTTGGTGTG
ATGGCTAACG CCACTGTGGT TAACGCTGAT ACTGACTTCT TAGAGGGGTT AGGCGACTCA
CAAAACTTAG TTGTTTTCTA CGAGCAAGAC AACTGGCAAG CACGTATTGC ATTCAATAAC
CGCGAAGCAT TCTTGCGTAA CGTTGATAAC GGTTTTAACG GCGAGCCTGT TAATACCCAA
ACGTTTGGTC AATGGGATGT GAGTGCGAGC TATGACATCA ACGAAAACTT CACAGTATTC
GTTGAAGGCA TTAACGTTAC GGAAGAAGAG CTAGTGCAAA CTGGTCGTTT CGACAATCAA
GTTTACTCGG TTGAAGATAA CGGTGCTCGC TACGCAGTGG GTGTTCGCGC TAAGTTCTAA
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| Protein sequence | MKKSYIWSAV KTALLVPTVA GLSMQATAQE ASDDSNLEVI QVRGIVSSLK RAMSDKKEAL
IVSDGIAAED LGKFPDLNVA ESLQRITGVS IDRSGGEGQA VTVRGFGPQF NTVLVNGRQL
ATDSGGREFN FDVLAADQIT GADVYKSTRA DLQEGGIGAT INVSTARPFD YEGFQLIGSV
KGMYETLSEE TSPSASFLVS NTFNDDKMGV LLAVSRQERD IQINTVGTAG WRPGQTISNR
DDGVLFTNAY IPRNWDQAID QQERTRTNAS LVFQFAPSDE VNITLDGFVS KFEVDSQVTD
LAAWFEPDRV GSATIDEATG TLLTFDQQIG LHGGSGDPAS DFVSHTRNSR DSQSDGFGLN
VEWDITPQLK GTFDVSTSSA ENDRAGKDRF NVVGIINNYA FDGTSSVPSV SHDGFGGDSL
PDASRARLHY NEKGLTFTDE DEINEFKADF VYLADSDVFQ KAQFGVYRQE REKSAFQIYG
SQCAFCGYGT PAPVDTIGFE AFTAKNFFPG YPETFYSYDG DAYIDFLAES GNPIEPTLQN
NRYTINEDIT SLYLDFTFMY DIGDMPLAVN VGARYAETDI SVAAVQSFIK DVVPTTDLTL
FANEFGPATD IQQGDSYSNL LPSVNVKLDL TDEMVLRFSV YDSMTRPTMS QLSPATVFNE
PRRQNLTASG GNPSLKPFTS ENWDLSFEWY YADASYFTFA VFSKEVEDFI VTLTGEETFT
FSDRTSADGF RCNNDTGENL CAVGLALDDT RPDYDVVANT EELNGASEVY TVSRPQNTET
TKVTGYEVAV THVFENGFGV MANATVVNAD TDFLEGLGDS QNLVVFYEQD NWQARIAFNN
REAFLRNVDN GFNGEPVNTQ TFGQWDVSAS YDINENFTVF VEGINVTEEE LVQTGRFDNQ
VYSVEDNGAR YAVGVRAKF
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