| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3661 |
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| Symbol | |
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| ID | 4175441 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4415783 |
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| End bp | 4416529 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056691 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_663217 |
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| Protein GI | 109899962 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.455757 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAATGA AAGGCAAAGT AGCCATAGTG GCAGGTGGTG GGCGTGATAT TGGCCGCGCT
TGTGCATTAG AATTGGCCGG CCGTGGTGCA GATGTGGTGA TTACTTATCT TGCCAGCGAA
GCTACCGCAC AGAGTGCAGT TGAAGAAATA GAAAAACTTG GTGTTCGTGC TGTCGCAATC
AAAGCTGATT TGACACAACA GCAAGATGTT GATGCATGTG TGCAAAGCAC TGTTGATAAA
TTTGGCAAAG TCGATTGCCT AGTGCATGTT TCAGGTGGAT TGGTTGAGCG TGTTAAAGTA
GCAGACATGA GTCTTAGCCA CTTCCATAAA GTGATGGACT TAAACCTAAC GTCACTTTTC
ATGATGACTC ACGCATGTAT ACCTCACATG CCTAAAGGCA GCAGCATAGT GACATTAGCA
TCTCAAGCTG GTCGTGATGG CGGCGGCGGT GGTGCAGCGA TTTATGCTAC TTCTAAAGGC
GCGGTAATGA CATTTACACG TGGTCTAGCA AAAGAGCTTG GTCCTGACAT TCGTGTTAAC
GGCGTTTGTC CAGGCATGAT CAGCACAGGC TTCCACGATA CTTTCACCCC TGACGCAGTG
CGTGAGAAAG TCGCTGGCTC TACAGCGTTG CAACGTGAAG GTAACTCTGA AGAAGTGGCT
AAATTGGTTG CCTTCTTGGC ATCTGACGAA GCATCTTATA TGACAGGTAC TAACGTTGAT
ATCAACGGTG GTATGTTGTT CTCATAA
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| Protein sequence | MTMKGKVAIV AGGGRDIGRA CALELAGRGA DVVITYLASE ATAQSAVEEI EKLGVRAVAI
KADLTQQQDV DACVQSTVDK FGKVDCLVHV SGGLVERVKV ADMSLSHFHK VMDLNLTSLF
MMTHACIPHM PKGSSIVTLA SQAGRDGGGG GAAIYATSKG AVMTFTRGLA KELGPDIRVN
GVCPGMISTG FHDTFTPDAV REKVAGSTAL QREGNSEEVA KLVAFLASDE ASYMTGTNVD
INGGMLFS
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