| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3651 |
|---|
| Symbol | |
|---|
| ID | 4175431 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 4402691 |
|---|
| End bp | 4404937 |
|---|
| Gene Length | 2247 bp |
|---|
| Protein Length | 748 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638056681 |
|---|
| Product | heparinase II/III-like |
|---|
| Protein accession | YP_663207 |
|---|
| Protein GI | 109899952 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.324454 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA TGAAAATGAC TGCCCTACTG TTAGTGGCAG CTGCACTCAA TGCGCCTTTG
GCATTGCAGG CGCAGGAGCA TCCAAATCTG ATTATGACCA AATCTGGTAT TGAAAAAGTC
AGACAGAACT TAGGCAATGT GCCTTTATTT GATGCCTCAG TACAAAGTGT AAAGAATGAA
GTGGACGCTG AAATTGCGTT AGGCATAGAC ACCCCCATCC CAAAAGACTT TTCCGGTGGT
TACACTCATC AAAGACACAA GCTCAACTTT CTAACGGCGC AGAAAGCCGG CGCGCTGTAT
CAAATATTGC AGGACGATAA ATACGCGAAA TATATTCGTG ACATGTTATT TCAATACGAA
GCTATGTATA TAGATTTGCC TGTTCATCCA CAAGAACGCT CTTACGCTCG CGGCAAGCTA
TTTTGGCAAT GTCTGAATGA CAGTAACTGG CTGGTGTATA TGGCTCAAGC TTATGATGCC
ATTTACGATA CCCTTTCAGC ACAAGAACGA GACAAACTCG AAAACAATCT TTTTCGCCCC
TTCGCAGATT TCATCTCGGT TGAGAATCCG CAATTTTACA ACCGAGTACA CAACCACAGC
ACGTGGGGAA ACGCAGCAGT AGGTATGATC GCTCTTGTGA TGGACGATGA AGAACTACTA
GACAGAGCGC TATACGGCAT CGAAGACGAC GGCCTTGAGT TGGGTGGCCG TGATAATGAC
GGCGGCTTTA TTAAAGTGGC TGGTCAGAAA GCCGGTTTCT TAGCGAATTT GGAGGACCCC
TTTTCACCCG ACGGTTATTA TACCGAAGGC CCCTATTATC AGCGCTACGC CATGTATCCT
TTCCTCATTT TCGGTTTAGC CATGAATCAT GTTAAACCTG AAATGAAGGT GTTTTCCCAC
AAAGATAACG TGCTGCTTAA AGGTGTCGAC GCATTGCTAA ATTTAACCGA CGCTGATGGC
GAGTTCTTCC CGCTTAATGA CGGCCAAAAA GGCATGTCTT ACTACACTCC AGCTTTGGTA
ACAGCAGTTG ATATTGCCTA TCAATACGGT GAACAAAATC CGCAATTATT AAGTATTGCT
GAAAAGCAAA ACCAAGTACT GCTAGACCAG TCTGGTTTGG CCGTCGCCAT GGGGATTCGA
GATGGAAAAG CCCAACCGTT TGTGAAAAAT TCTATTAACC TCAGTGACGG CCAAGAAGGT
GATCAAGGAG GCGTGAGTGT ATTACGCTAT GGCAATGAAG AGCTTACCTT AGTATTCAAA
TATGCCGCAC AAGGGCTTAG TCACGGTCAT TATGACAAAC TTTCGTTTTC CCTTTATGAA
AGTGGCGATG AAGTGCTGCA AGATTATGGC CTAGCGCGCT TTGTTAACAT AGGTCAGAAA
GGTGGCGGTA ACTATTTAAA AGAAAATAAA ACCTGGGCTA AAACAACCAT TGCTCACAAC
ACCTTGTCGA TAAACGAAAA AATGCATTTC AGTGGTAAAT ACGAAATTGC CAGTGAGCAT
CACTCTGATC TCTATTTTTA TGATGATACA AAGGATGATG TACAAGTTGT TAGTGCAACA
GAGAGTAACG CTTATCCAGG TACAAAGATG CACCGTACTA TGGCCATTAT TAAAAATGAG
GGTTTAGAAA AGCCGTTTCT ACTGGATATT ATGAAGGTTA AATCTGATAG CAAAAACCAG
TACGACCTAC CATTTTATTA TATGGGTCAG GTATTGAGCG ACAATTTTGA GTATGACTCG
CCTACCTCCT TAAACCCATT AGGTGACCAA AATGGTTATC AACATCTGTA TTTAGAGGGA
AAAGGTAAAC CATCTTCAAG CACTACGCAG TTTTCTTGGT TAGGTGATGG TAAATACTAC
ACTTTGACCT CAGCCACAGA GGAGTCTGAC GAGTTGTTAC TGACTCGGTT AGGAGCGAAT
GATCCGGATT TCAATTTACG TAGAGATGCC GCATTCATGC TGCGCAGGAA AGACAGCGGC
AATACCACTT TTGCTTCAGT TGTTGAACCC CATGGCAGCT ATAGCCCGGT GTCTGAGTTG
TCGGTTAACT CTGACAGTAG TATTGCCGAG CTGAGCGTGG TGCATGATGA TGACGCATAT
ACCGCTGTAT CGATTGAAAG CCTTAAAGGC GTTAAAAGCG TATTTATTCT AGCGAACAAA
GACGCCACGA AAAGCAAACA ACACAAACTT AAGGTGAACG GTAAGGTATT CAGCTGGACT
GGCCCCTATT TCTATGCAGG GTCTTAA
|
|---|
| Protein sequence | MKKMKMTALL LVAAALNAPL ALQAQEHPNL IMTKSGIEKV RQNLGNVPLF DASVQSVKNE
VDAEIALGID TPIPKDFSGG YTHQRHKLNF LTAQKAGALY QILQDDKYAK YIRDMLFQYE
AMYIDLPVHP QERSYARGKL FWQCLNDSNW LVYMAQAYDA IYDTLSAQER DKLENNLFRP
FADFISVENP QFYNRVHNHS TWGNAAVGMI ALVMDDEELL DRALYGIEDD GLELGGRDND
GGFIKVAGQK AGFLANLEDP FSPDGYYTEG PYYQRYAMYP FLIFGLAMNH VKPEMKVFSH
KDNVLLKGVD ALLNLTDADG EFFPLNDGQK GMSYYTPALV TAVDIAYQYG EQNPQLLSIA
EKQNQVLLDQ SGLAVAMGIR DGKAQPFVKN SINLSDGQEG DQGGVSVLRY GNEELTLVFK
YAAQGLSHGH YDKLSFSLYE SGDEVLQDYG LARFVNIGQK GGGNYLKENK TWAKTTIAHN
TLSINEKMHF SGKYEIASEH HSDLYFYDDT KDDVQVVSAT ESNAYPGTKM HRTMAIIKNE
GLEKPFLLDI MKVKSDSKNQ YDLPFYYMGQ VLSDNFEYDS PTSLNPLGDQ NGYQHLYLEG
KGKPSSSTTQ FSWLGDGKYY TLTSATEESD ELLLTRLGAN DPDFNLRRDA AFMLRRKDSG
NTTFASVVEP HGSYSPVSEL SVNSDSSIAE LSVVHDDDAY TAVSIESLKG VKSVFILANK
DATKSKQHKL KVNGKVFSWT GPYFYAGS
|
|---|
| |