| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3650 |
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| Symbol | |
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| ID | 4175430 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4399376 |
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| End bp | 4402414 |
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| Gene Length | 3039 bp |
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| Protein Length | 1012 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638056680 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_663206 |
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| Protein GI | 109899951 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000400327 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGACACA AACTATCTAA AATTACCTTA GCGGTGTTAT CAGCTACTTC GTTAAGTTTC
GCTTCATCCG CACTTGCTCA AGAAGCTCAG CCAGTTGAAG AGAGAGACGT CGAAGTCATC
GCTGTATCAG GAATACGTAG TTCACTTACG AGTGCTCTTC TAGAAAAGCG TGAAACAAAT
AACCTGATCG AAGTCATTGA AGCGGTAGAC ATCGGCAAGT TACCAGACCA AAACTTGGCT
GAGGTACTGG AAAACGTAAC AGGTATTCAA ATTACGAGAA CAGCAGGTAT CGGTACCGGC
GTGCAGATTC GAGGCAGCAA TGCTAACCGA GTTGAAATTA ACGGGGCCTC AACGGTAGGT
TCAGGTTCTG GTCGTAGCGG AATGAATTTT GAAGATTTGT CTGCGGCGAT CATTGCAGGA
GTTGAAATAA CCAAAGCGCC GGAAGCAAAA ACCACCGAAG GTTCTATAGG CGGCACGATC
AATCTACGTA CTATTCGTCC TCTTGAATTA ACGGAGACTT TGGGCTCTAT CCGCTTGCAA
GGTGAAGACA GTAGCTTAAC AACTGATGGC GTGCAGCCAA GGGTTTCAGG TGCATATGGC
GATAACTGGG AACTTGACTC TGGTAGATTT GGTTTTGTTA TCAGCGGTAG CTATACCAAA
CAAGAAGCGA CTTCATTTCG TCCACGCCTC GATCGTGATG GCAGTTTAGT TGAAAATGTT
AACGCGGATG TTATTCGAAG CGGGGAGTTA GAGGATCAAG CTGCAGATAG ACCTATAGCC
CAATCGTTCG ATTTTCTTGG TATTCAATTC TTGAACCAAG AATTGGAAAA CTTCGAGTAT
GAAACGACCA ACATCGCGAC TACATTTGAA TTTGCACCGA ACGACAACAT GAAATTTTTC
TTCGATGCGG TCATTACTGA CCAAGAGCGT CGTCAAGATA GCACACGTGT ACAGGCGTCT
GGAGTAGGCA GCGTATTGAA CTATAGTTTG CCAACTGAGT TTGAGACCGT TAATTTTGGC
TCTCTTGATG GCGTGAATTT AGGCAGTATT CAAGCTGCAG TGAGAGGCAC AATTCAGCCT
AATTTGGGTG TTGACGATGA TGATCCTAAT CTTCGCTTTA ACAGTGATAC TGGAGCGCGG
ATCACAGACA CTGAAATATT CAGATTAGGT GGTGAATGGC AAGGTGAAAA CTTGTTCGCA
AGTTTTGAGT TTTCAAGCGC GAGCTCTGAT ACTGAAACTC CTTCACTTAA TACTCAGTTG
AACTTTATTA ATCCGAATCC GCTTACACCG CTGGACAATC TCGATGAAGA CGGTAACCCA
ACCGCTGACA CCAGCAACGA CAATAGTGTG CCATTTATTT ATGATCTAAC CGGTGATTCA
TTGGCGTTTG GCATAGATTT CGCTTCACCA TTTGCACCCA CCGTAGCCGA TTTATTAAAT
CCTAACAACG TAGTGCTTGA TCAGGTCGAT TTGACGCGCA GTACAACTGA AAACTCAGAA
GATGCCTTTC GCACCGATTT TACTTATTTC ATAGATGATT CCATTGTTAC TTCTGTAGAT
TTTGGTTATC GCTACAATAA AACTGAACAC AGCGCAGTCA GCATTTCAGA CCGTATTGGA
GGATTCAGTA AGTTAGTAGA TAGCCCTAAT GGCTCATTGT TCTCAGAGTT ATTAGTTGAA
GGCCCGGATC ATTTTGGGGA TGCTGATGGT AGAGAATTAG CTTTTCGTAA TTTCTTGATT
GTCGACCCAG ACCGTGCTTT CAGTGATCGA GATGGAACTT TGGAGATACT GGAGTCGGCT
ATTATTGCCC ACGGCGGTAA TCAAGATTTA GCAAACTTAG TACCTGATTC TTCTGAGATT
TTTAGCATCG AAGAGAAAAC TCATGCTTTG TATGCACAAG CTAACTTTGA GTACGAAATG
CTCCGCGGTA ACATCGGGGT TCGCCATATA GAAACAGATA TTGAATCTAT AGGTAACACT
GAGATAAATG GTGTTGTCTC TGCAGTAACA AACAAAGGCG ATTATAGTTA TACACTCCCT
CGTTTAAACC TTGTTGCAGA TGTTGCCGAA GACGTTGTGT TGCGTCTTGG TTGGGGTAAA
GATATTTTGC GTCCTAACTT CGGTGACTTA AACACATCTG TATCGTTTGG CACCAACGAG
AACCAGTCTG TTGAAATTGG TAATGCAGGG CTTGAACCAG AAGAAGTAAC CTCTTTTGAC
TTGTCAGCTG AATGGTATTT TGCTGAAGCT GCGGTTGTCA GCATCGGTTA TTTCAAGAAA
GATCGTACCA ACTTATTTGT GACTAACTTA GAAAGTGCAA CCCTTGATGC TAACGGGTTA
CGAGATAGCA ACCCTGCTTG TTCAGGTGGC GGTATCTACA ACCCTGCTGT TCAACCAAAC
GTGTTAGGTG ACCCAAACAC AACAGGCTTG TGTGTTGACG TTGAAACGTT CTTTAATGAC
TCAGCTACAA CCACTCAATC AGGTGTAGAA ATGGCATTTC AGTATGACCT TTCTAGCTTT
GAGGATGATC TAGGTTGGGC GTCAGGCTTC GGTATTCTAG CTAACTACAC TGTGCAAGAA
TTTGACGGCG GTTCAGCTTT CTACACCTCA GCCACCCGCG GTACTGATGT ATTCAATGCA
ATAAACGGTG TTTACGATGA CAGTCAATTT GTAAAAGTGA CGTCCGAGCG AGGCTTACTC
GACTTTTCCG AGAATGCCTA CAACTTTACT TTGTATTATG AAAAGTATGG TTTATCAGCT
CGCGTGCGCT ATACATGGCG TGAAGCATTC CGCACCGAGG ATACCGCAGC GGGTGCGAGC
TTGAACTCAA CGTTAGGTTT CCCAGTTGTA ACACATGACA GAGGACAGCT TAATGCCAGT
ATCAGTTATG ATGTGAACGA TCAGTTAAAC TTGGGTGTTG AAGCCGTCAA CTTGACCGAG
TCTGATATTA CTCAGTCTTG CGTGAACGAA GATGCTTTAC TGTGTGCTCA GGGTATAACA
GACCGTCGGA TTACCTTTGG TGCAAGTTAT CGCTTCTAA
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| Protein sequence | MGHKLSKITL AVLSATSLSF ASSALAQEAQ PVEERDVEVI AVSGIRSSLT SALLEKRETN
NLIEVIEAVD IGKLPDQNLA EVLENVTGIQ ITRTAGIGTG VQIRGSNANR VEINGASTVG
SGSGRSGMNF EDLSAAIIAG VEITKAPEAK TTEGSIGGTI NLRTIRPLEL TETLGSIRLQ
GEDSSLTTDG VQPRVSGAYG DNWELDSGRF GFVISGSYTK QEATSFRPRL DRDGSLVENV
NADVIRSGEL EDQAADRPIA QSFDFLGIQF LNQELENFEY ETTNIATTFE FAPNDNMKFF
FDAVITDQER RQDSTRVQAS GVGSVLNYSL PTEFETVNFG SLDGVNLGSI QAAVRGTIQP
NLGVDDDDPN LRFNSDTGAR ITDTEIFRLG GEWQGENLFA SFEFSSASSD TETPSLNTQL
NFINPNPLTP LDNLDEDGNP TADTSNDNSV PFIYDLTGDS LAFGIDFASP FAPTVADLLN
PNNVVLDQVD LTRSTTENSE DAFRTDFTYF IDDSIVTSVD FGYRYNKTEH SAVSISDRIG
GFSKLVDSPN GSLFSELLVE GPDHFGDADG RELAFRNFLI VDPDRAFSDR DGTLEILESA
IIAHGGNQDL ANLVPDSSEI FSIEEKTHAL YAQANFEYEM LRGNIGVRHI ETDIESIGNT
EINGVVSAVT NKGDYSYTLP RLNLVADVAE DVVLRLGWGK DILRPNFGDL NTSVSFGTNE
NQSVEIGNAG LEPEEVTSFD LSAEWYFAEA AVVSIGYFKK DRTNLFVTNL ESATLDANGL
RDSNPACSGG GIYNPAVQPN VLGDPNTTGL CVDVETFFND SATTTQSGVE MAFQYDLSSF
EDDLGWASGF GILANYTVQE FDGGSAFYTS ATRGTDVFNA INGVYDDSQF VKVTSERGLL
DFSENAYNFT LYYEKYGLSA RVRYTWREAF RTEDTAAGAS LNSTLGFPVV THDRGQLNAS
ISYDVNDQLN LGVEAVNLTE SDITQSCVNE DALLCAQGIT DRRITFGASY RF
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