| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3648 |
|---|
| Symbol | |
|---|
| ID | 4175428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4396010 |
|---|
| End bp | 4397209 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638056678 |
|---|
| Product | mannonate dehydratase |
|---|
| Protein accession | YP_663204 |
|---|
| Protein GI | 109899949 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1312] D-mannonate dehydratase |
|---|
| TIGRFAM ID | [TIGR00695] mannonate dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.63309 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGAAT CCTGGAGATG GTTTGGGCCG AGTGACCCCG TGACCATAAA CGAAATAAGA
CAAACTGGCG CCACAGATGT GGTGAGTGCG CTGCATACTA TTCCTACCGG TGAGGTTTGG
AGCATTGAGG CTATACGCCA ACATCAAGCG TTGATTGAAG AGTGCGAGCA AGGTCTAACG
CCGTTAACGT GGAGTGTGGT TGAAAGTATT CCTGTTCACG AAGACATCAA ATTGGCGCGA
CCAGGCCATG AAAAATACAT AGAAAACTGG ATCCTCTCTA TGGAGAATCT GGCAAAGTGT
GGCATTAAAA CGATCTGCTA CAACTTTATG CCCGTCATTG ATTGGACGCG CACAGACCTT
AATTTTAAGC TGCCAACAGG TGCTTATGCT TTGCGTTTTG ATCAGAAAAA GTTTGCCGCT
TTTGATTTGT TTATTTTACA GCGCGAAAAC GCAGAAGCTG AATACAGTGC AGAAGAACTC
AAAGAAGCCA AGCACGTTTT TGATGAAATG TCAGAGCAAG AAAAAAACAA ACTGACCAAT
AACATCATTG CGGGTTTACC TGGGCGAATG ACAGACAGTT ATGGAATAGA CGATTTTCGC
GCCATGCTTG CCAATTACAA AGACGTTAGC AGTGATGTGC TGCGCAGTCA CTTGTTTGCA
TTTCTATCTA AAGTACTGCC TCGGGCTGAA GCCATGGGCG TCAAGCTTGC CATCCATCCA
GACGATCCCC CTCGAGACAT GCTAGGCCTG CCACGGATCA TCTGTACCGC TGATGATTTA
GAGCTGCTGT TTGCGGCGCT GCCTAGTGAA TCAAATGGCA TTACCTTGTG CGTGGGCACT
TACAGCAGTA GGCCTGATAA CGATTTACCT GCAATGGCTA AACAGTTTGG CCCGCGTATC
CATTTTTCAC ATTTGCGTGG GGTGAGTCGT GACCCAGATG AACAGCGTTC GTTTTATGAA
GCCAGTCACC TTGATAGCGA CATCGACATG GTGCAGGTCG TTAAAGAGTT GCTGAATGAA
GAAGCGCGTC GTTCAAAAGA AAGTGCTGAC AGCTTAGGCA TTTTCATTCG CCCAGATCAC
GGCCATCAAA TGATGGGAGA TATTGGCAAA ACCGTTAACC CTGGATATTC AGGCATAGGC
CGCATGAAAG GCTTAGCTGA AGTGCGCGGC GTTATCCGTG CTTTATCAGT GCTGCAATAG
|
|---|
| Protein sequence | MRESWRWFGP SDPVTINEIR QTGATDVVSA LHTIPTGEVW SIEAIRQHQA LIEECEQGLT
PLTWSVVESI PVHEDIKLAR PGHEKYIENW ILSMENLAKC GIKTICYNFM PVIDWTRTDL
NFKLPTGAYA LRFDQKKFAA FDLFILQREN AEAEYSAEEL KEAKHVFDEM SEQEKNKLTN
NIIAGLPGRM TDSYGIDDFR AMLANYKDVS SDVLRSHLFA FLSKVLPRAE AMGVKLAIHP
DDPPRDMLGL PRIICTADDL ELLFAALPSE SNGITLCVGT YSSRPDNDLP AMAKQFGPRI
HFSHLRGVSR DPDEQRSFYE ASHLDSDIDM VQVVKELLNE EARRSKESAD SLGIFIRPDH
GHQMMGDIGK TVNPGYSGIG RMKGLAEVRG VIRALSVLQ
|
|---|
| |