| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3640 |
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| Symbol | |
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| ID | 4175420 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4386604 |
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| End bp | 4388874 |
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| Gene Length | 2271 bp |
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| Protein Length | 756 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638056670 |
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| Product | Poly(beta-D-mannuronate) lyase |
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| Protein accession | YP_663196 |
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| Protein GI | 109899941 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0350459 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCAAAG TGCCTAAAAG CCGTTTATCA TCTATTTTAA TACGATCTGT AAGACTACCA
GCACTCGCGC TGGCTTTGCC ACTGCTGACG TTTTCTCAAT TGAGTCACGC TGCATTAGTT
GAAAACATCA AACAGTTCAA TGACGCTGTA TCGTCCGTTA AGCCAGGGGA CGAAATCGTC
CTCGCAAATG GCTCATGGAA TGATGTAGAG CTCGTGCTAA AAGGTAAAGG TTTGCCAGAC
AAACCCATTA CGTTAAAGGC GCAAACGCCG GGCAAAGTCA TTATCACAGG GCAATCTAAT
TTGGCGTTCT CTGGGGAGTA TATTGTGATC TCTGGCTTAG TGTTTAAAGA CGGTGCAACA
CCAACAGGCG AAGTCATCTC GTTTCGCACA TCAAACGAAG ACGTCGCAAA TCACTCACGT
GTGACCAATA CCGTGATTGA CAACTTCAGC ACCGATTTAC GTCAAATGTC TGATTTATGG
GTGGCCATGT ACGGCAAGCA TAATCGCCTT GACCACAACT CCTTAGTGAA CAAACGTAAC
CGCGGCGTAA CAGTTGCCGT GCGAATGAAC TCTGAAGCCA GTCGCAAAAA TCATCACATC
ATTGAGTACA ATTACTTTGG CCCTAGACAA ATACTCGGCG CCAACGGCGG TGAAACCCTG
CGTATCGGCA CCAGTCATTT TTCTCGCGAG TACTCGAACA CCACAGCCCA GTACAATTAC
TTTGACCGCA CAAACGGCGA GCATGAAATC ATCTCCAATA AGTCCAGCGG CAATTCACTT
ATCAAAAATG TCTTTTTTGA AACCCAAGGC ACGTTAACCA TGCGCCACGG CCATTTCACT
AAGGTGGAAG GCAATTACTT TTTAGGTAAC CGTAAACCCA ATACCGGCGG CATTCGCATT
ATTAACGAAA GCCAAACCGT GAGTAACAAC TATATGTACG GGTTAACCGG TAAACGCTTG
CGCGGTGCGT TAGTGATCAT GAACGGCGTA CCTAACTCAC CACCTAACCG CTACGATCCC
GTTATTGATT CGGCTATGAA CAACAACATT GTTATCGACA GCGACCACAT TGAACTCGGC
GCAGGTGCCG ATGCCGAGCG CTCTGCTGCG CCTAGTACTT CTGAATTTAA AGGCAACATC
ATACTGGGTA AGTCTAATCT TGAACCTTTT ACGTTGTACG ACGATATGTC AGGGATTAAT
TTCGAGGGTA ATTACCTAAA CGACGAAGCC AGTACCCCCA TTAAAACAGG TTTTGCTAGC
ACGCCTTATT CAGTTACGAC CAACCAATAT GGCTTAAAAT CTCCCGATAA AGCATTACTC
GATGAAATTG GTTTTGGCGA AGTGAAGCTG CCAGTAACAA AAGAAGAAGT AGGTGCTGAT
TTTTATCCTA AAAATGAAGC TTTGGTGGCA TTTCAAAGCG GTAAAACCAT CCACGTAAAA
GCAGGTACAG ATACTCTGAC CAGCGCTCTG GCAACGAGCC AAGGTGGGGA CGTACTGGTG
CTCGAAAACG GCGCTGATTA CCTGCTCACC AAGTTTGCCG AAGTACACCA CCCAGTGACA
ATCATGGCTA AAGCAGGCAA AAAACCGGTT ATTCGCTCAC AAAAGCCTAA CTTCATCAAT
ATCGAAAATG GCGGTGCCTT AGAAGTTGAG AATCTGTGGT TTGATGGCGC TGAATCTCCT
GATTACAAAG GGAACACCAT CATAGGCACC AGTGGCTACT CGATGAATAT TAACTACAAC
TTGTCAGTGC GTAACGTGAA AGTGACCGAC TTGGATGTGA ATGGTTATTT TTACTTCTTT
AAAGCCAACG CAGGCACCTT TGCTGACTCC ATTGAAATCA TCGATTCAGA ATTTAGCAAC
ATTACAGGTG CCATTCTGCA ATTAAACCGT GAAGTCGACG ATTTAGGTGT GTACAGCGTT
GAAAACCTTG TGATTTCGGG CAACACCTTC ACCAATGTAA AAGAAGAAGT TGTCACCGTA
TATCGCGGTG GTACCGATGA AAGTACCTTT GGCCCAATGG TAAGCGTCAC CAACAACACT
CTGACCAATG TAGGCAAAGG CTCTACACAC AGATCAGGCG CGTCTATGTA TTTTCACGGT
GTGCAAAAAC TCAATATCTC TGAAACAAAA TGGGATAACA GCGCACCACT GGAACTGTTC
TTGACCAATG GCGGCCCCAT CACAGTGATT GACAATGTTG AGATGAAGAA CACCGATAAA
ATCCGTGCAA ATAATGACGA ATATGAAAGC TCAAATGTGA CTTACGACTA G
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| Protein sequence | MPKVPKSRLS SILIRSVRLP ALALALPLLT FSQLSHAALV ENIKQFNDAV SSVKPGDEIV
LANGSWNDVE LVLKGKGLPD KPITLKAQTP GKVIITGQSN LAFSGEYIVI SGLVFKDGAT
PTGEVISFRT SNEDVANHSR VTNTVIDNFS TDLRQMSDLW VAMYGKHNRL DHNSLVNKRN
RGVTVAVRMN SEASRKNHHI IEYNYFGPRQ ILGANGGETL RIGTSHFSRE YSNTTAQYNY
FDRTNGEHEI ISNKSSGNSL IKNVFFETQG TLTMRHGHFT KVEGNYFLGN RKPNTGGIRI
INESQTVSNN YMYGLTGKRL RGALVIMNGV PNSPPNRYDP VIDSAMNNNI VIDSDHIELG
AGADAERSAA PSTSEFKGNI ILGKSNLEPF TLYDDMSGIN FEGNYLNDEA STPIKTGFAS
TPYSVTTNQY GLKSPDKALL DEIGFGEVKL PVTKEEVGAD FYPKNEALVA FQSGKTIHVK
AGTDTLTSAL ATSQGGDVLV LENGADYLLT KFAEVHHPVT IMAKAGKKPV IRSQKPNFIN
IENGGALEVE NLWFDGAESP DYKGNTIIGT SGYSMNINYN LSVRNVKVTD LDVNGYFYFF
KANAGTFADS IEIIDSEFSN ITGAILQLNR EVDDLGVYSV ENLVISGNTF TNVKEEVVTV
YRGGTDESTF GPMVSVTNNT LTNVGKGSTH RSGASMYFHG VQKLNISETK WDNSAPLELF
LTNGGPITVI DNVEMKNTDK IRANNDEYES SNVTYD
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