| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3638 |
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| Symbol | |
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| ID | 4175418 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4382227 |
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| End bp | 4385208 |
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| Gene Length | 2982 bp |
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| Protein Length | 993 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056668 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_663194 |
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| Protein GI | 109899939 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000344146 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACGCT CAACCATGAA ACTTAATCAA GTCAGTGCCA TATTCAACAA AGCCAGAATA
ACCGCCAGTA ATATTGCGAT TTTCGGCACA GCATTATCGG CTATGCTTAT CGCGCCTTCT
TTAGCAGCGC AAACGCAAGG CGAAGACGTC TCAGCCAATG AAGATTTAGA AGTAATTCAA
GTAAAAGGTA TCGCCGGCAG TTTAGCGGAG TCAGCACGAC AAAAGCGCTT TGATTCACGC
ATCGTCGACG CCATCGTTGC TGAAGATATT GGTAAATTGC CTGACAACAA CATCGCAGAG
GCACTACAAA GAATCACTGG TGTGTCGATA AGTACCGATT TTGGTGTGGG TGAATCTGTC
ACTATTCGTG GTATTTCTCA AAACCGCGTT GAATTAAACG GCCGCTCCAC CTCAGGTAGT
GGACGTGGCG GTATTAGCTT AGACGACTTC CCTTCTAGCT TCTTAAAAAC CGTCGAAGTG
ATTAAATCCC CTACGCCTGA AATGATTGAA GGCGCGCTAG GCGGCACAAT CAACATGACA
ACAGTGCGTC CTTTAGAGTT GGAAGAGCCG CTTATCGCTC TCACTTTAGA TGGCGAGTAT
GCTGACAAAA CTGAGAATTG GGCTCCTATG GTCAATGCCG CAGCAGGCAT GAACTGGGAT
TTAGGCGATG CAGGTACATT TGGTGCTTCG TTTGTGGTGG CATATCAAGA TCGCGAGTTA
CGCCGAGACG AATTCATCAA CCTCGTCACA CCCACCGAGC TTGATTTAGA TGGTGACGGC
ACGAGCGACC AAGCCAATAC ACCTAGCGGC AATTACCTTG TCAGAAGCCA AAACACGGTT
GAACAGAAAA CTGAGAAGCG TGAACGTACG GCATTAGGAT TGTCCTTACA ATGGGCACCT
AAAGACACTG ATGGTTTTAT TTATTTAGAC ATTAACACCA CAGAACTCGA CGGCGGCCAA
GAAGCTTACT CAGTGCTGAA CGACAGTAAA GACTATGGCG ATTTAGTGCT TGATAACGCA
TACGGCGACA GTCAAGGGCA ACTGCATAAC TTCGGTTCAG GCAGTGTATT TGTACAACCT
AAAACCTGGT CTGACTTTAC CACTAATGAA TCAATCTCCA ATGCATTGGG CGGTGAATTT
CAGCTAACGG ATCAAATAAA AGTATCTGGC GAAATTTCGT ACGCAAAGTC TGAGGCAAAA
CGTAGAAACT CTGAATTTAA CTTGCGCCCT ATTTCTCGCG AACAATATGA TGCCGACGGC
ACCATCACTG AGCATTTATT CACCATCACC ATGACCCAAG ACGGTGACCA AGTACCGGGG
CTTGCATTTT CAGACCAAGA TGCCCTGCTT GACCCAGATA ACTTAGCTAT TCGTCAGTTC
ACACATCAAC GCTACTCAGA GGACAACGAA GAAACCGCTA TTCGTTTCGA CGTGGAATAC
ATTGAACCGT TTGCCGGTTT GGACTTCCTT CGCTCTATCA AGGCCGGTGT GCGCACCACT
GATAGCGAGT ATGAACTAGA CAGATACGAC TTACGCAACA ACGGCAGTGA GCTTAAAAAC
TTGCAAACCA GCGTATCGTA TGACGGTGTT GTTACCCCAA CTTGGATAGG TGATTTCAAT
GATGCCTTCG GTGGGTTTAA AGCCATTAAC CACTCAAACT CATTCGATCA AGCCGGTATT
TCAGGCAATA ACGCATTAAC CAATTACTTT GTGTATGACG GTGCAGCGTT AGCGTATGAC
ATTAATGGTA CCTACGACCG AGTGAAGCAA ATGCTCGCCG GCAGTAACCT AGAGTTGACT
GGCACGTTAG ACGAGAACAT GGCTCGCAAC ACAGGTTCTT ACGCGAAAAT TGAAGAAGAA
ACTAAAGCCG TATATACCCA GTTCAATTTG GACTTTGATC GTTTAACCGC AATCATTGGG
GCGCGTTATG TGACCACAGA TTTAACCTCG AGCACCTTTG ATGACACCGC TGAACACGAC
TATTCAGACT TCTTACCCAG CATCAATGCG ACGTACAATC TTACTGAAGA AACGATTCTA
CGCTTTGCTG CAGCTAAAGT GATGCGCCGT GCTGAATTTG GTGAGCTGAG TCCTGCATTA
AACGTGGATA ATTCGATTGT AACGGGCACA CAAGGCTCCT ATAAATTGGA CCCTTACCGC
GTTACACAAT ACGATTTATC TGCGGAGCAT TACTTTGGTC AAGGCGGCTT AATGTCGGCG
GCTATTTTCT ATAAAGACGT AGAATCATTT ACGGTTAGCA GCAGTTCCTG CCAAGCAAGC
GCAGACACTA TTGAAGGACA AAACGTGACT GAATACGTCA ACGTGTGTCT ACTCGATACT
GCGGGCGTGA GCCAAGCCAA TGTTAACTAC GCTTCAAGTG ATCAAGACCT CGCCTATGTC
GAAGGCCAAC GCGATGCAGG CCTAACCGGT ATTGTTATCA ACACTGACGT AAATGGCGGT
AGCGGTAAAA TCGTTGGTAT TGAATTAGCC TACCAACAAC AATTTAGCTC GTTACCAGGG
GCATGGTCTG GCCTAGGCAT TAGCACCAAC TACACTTACG CCGATAGTGA GCAACCAGAT
GGTAACCCAC TATTAGATAT TTCTAACAAC ACAGTTAATG CTCAAGTGTA TTGGGAATAC
GAAGGATGGC AGGTGCGCTT AGCTTACAAC TGGCGTGACG AGTACCTCGA TACTCAAGAC
GAAAAACGTG TTCGCCCAGT AGGCGCCCTG GCAACGGGTA TCTATAACCG AACGGACCCT
AATGCTGAAT TCTACGACCC AACACTGGGC AATAATTACC GGGATGCGCG TGGCCAATTC
GACTTCTCAG CGAGTTACGA TGTAAACGAA AACATAACGC TAGTAGCAAA CGCTGTAAAC
CTGACAGGCG AGCCTATTCG TCAGGTCACT GAGCTGGGTA GCATTTGGCA ATACAGCGAA
GCAGATCGTC GAATGACTGT GGGTGTAAGA GCCAAGTTTT AA
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| Protein sequence | MQRSTMKLNQ VSAIFNKARI TASNIAIFGT ALSAMLIAPS LAAQTQGEDV SANEDLEVIQ
VKGIAGSLAE SARQKRFDSR IVDAIVAEDI GKLPDNNIAE ALQRITGVSI STDFGVGESV
TIRGISQNRV ELNGRSTSGS GRGGISLDDF PSSFLKTVEV IKSPTPEMIE GALGGTINMT
TVRPLELEEP LIALTLDGEY ADKTENWAPM VNAAAGMNWD LGDAGTFGAS FVVAYQDREL
RRDEFINLVT PTELDLDGDG TSDQANTPSG NYLVRSQNTV EQKTEKRERT ALGLSLQWAP
KDTDGFIYLD INTTELDGGQ EAYSVLNDSK DYGDLVLDNA YGDSQGQLHN FGSGSVFVQP
KTWSDFTTNE SISNALGGEF QLTDQIKVSG EISYAKSEAK RRNSEFNLRP ISREQYDADG
TITEHLFTIT MTQDGDQVPG LAFSDQDALL DPDNLAIRQF THQRYSEDNE ETAIRFDVEY
IEPFAGLDFL RSIKAGVRTT DSEYELDRYD LRNNGSELKN LQTSVSYDGV VTPTWIGDFN
DAFGGFKAIN HSNSFDQAGI SGNNALTNYF VYDGAALAYD INGTYDRVKQ MLAGSNLELT
GTLDENMARN TGSYAKIEEE TKAVYTQFNL DFDRLTAIIG ARYVTTDLTS STFDDTAEHD
YSDFLPSINA TYNLTEETIL RFAAAKVMRR AEFGELSPAL NVDNSIVTGT QGSYKLDPYR
VTQYDLSAEH YFGQGGLMSA AIFYKDVESF TVSSSSCQAS ADTIEGQNVT EYVNVCLLDT
AGVSQANVNY ASSDQDLAYV EGQRDAGLTG IVINTDVNGG SGKIVGIELA YQQQFSSLPG
AWSGLGISTN YTYADSEQPD GNPLLDISNN TVNAQVYWEY EGWQVRLAYN WRDEYLDTQD
EKRVRPVGAL ATGIYNRTDP NAEFYDPTLG NNYRDARGQF DFSASYDVNE NITLVANAVN
LTGEPIRQVT ELGSIWQYSE ADRRMTVGVR AKF
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