| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3635 |
|---|
| Symbol | |
|---|
| ID | 4175415 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 4377530 |
|---|
| End bp | 4379785 |
|---|
| Gene Length | 2256 bp |
|---|
| Protein Length | 751 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638056665 |
|---|
| Product | TonB-dependent receptor, plug |
|---|
| Protein accession | YP_663191 |
|---|
| Protein GI | 109899936 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000221173 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGGCCCAC AACAGAACAC ACACACACGT TCACGCAACA TTAGCTTACT TGGCGCAGCT
ATTTCGTTAG CATTAGCAGG TCATGTTAGC GCACAGACTA CAGAAACCGA GCAAGCATCG
AACGACGACT TCGAGAACAT CACAGTCACT GCCCGTAAAC GTACAGAAAG CTTATTTGAA
TCCCCTACTG CGATCACATC TTTAAGTGAC AGCTTCATGG AAGATGCCAA CATCAGTAAC
TTAGATGACG TGGGCAAATA CGTGCCCAAT TTAAACGTCA GTCGTTATGG CGGTGGCAAC
TCTGCCCACG CATCTATCTT TATTCGTGGT ATTGGCTTGC AGGATCACAT CATCACTACC
GATCCCGGCG TGGGCGTGTA TGTTGATGGC GTATATTTAG GTCGTCAAAT GGGCGCTAAC
CTAAGCCTGC CTAACATCGC AAGCGTTGAA GTATTACGTG GTCCACAAGG CACATTATAT
GGTCGAAACA CCCTAGGTGG CGCGGTTAAC ATTATTACTA AAAAACCAGG CGATGAGTCC
ATGGCCAGTG TGGCTGCCAA GGTCGGCACC CTAGGTCGTG TAGCCGCTGA TTTATACATC
AATGGTGACA TTAACGACGA TGTCAGCATT GCTGCCAGTG GCTCATTCAA AAAACGCGAC
GGTGTAGGCA AGGCTGTTAA CTTAGCCAAC CCTGAAAAAG AAATCGGTGA AGAGCAAGAA
TTCAGTGGCC GCTTATCTGC TAACTGGAAC GTCAGCAATA GCTTCTCACT ATTATTCGCC
GTAGATGGCT ACGATAATGA AAGTGGCCAA TCGCCGTATA CCATCGAATT TACTGACCCA
AGCCCTGATC CGACAGATGT CTTTAACGGT GACTTCCCCC TATTAACGCC TGATTTAATC
CCTTCAGATC CCGATGATTT AGGCACCACA GTACCTGGCC TTGAGTCTAC CGCGTCTGCT
GGCTGGGGCG CGTCAATCAC CGCCAATTGG GATATCAACG AAAACTACGC AACAAAACTG
ATCACGAGCT TCCGCAGTTC TGATTACGAA GGTGGCCTTG ATGATGATGC CTCACCGCTT
AACCTGTCTG AATTCCCAGA AACAGGTGAA GCTGATCAGT ACTCGGTAGA GCTGCAAGTG
AATGGTACCT TTGACAACTA CGACTTTGTA TCAGGTGTGT ACTTCTTCAA CGAAGAAGGC
TCAACCTCAT CAGGCCCTTG GGTATTTAGC CCGTTCAATA CGCCAGGCGC ATTGAATAAT
GACGGCACGC CAACTGGGTT CGGTGGCGAT TATGGTTTCT TCGATTTACA TCAAGAAACA
GACGCTTTCG CGATTTACGC TAACGCTTCA TATGATGTGT CAGAAAAGCT GACCGTGGGC
GGTGGTTTAC GTTACTCGAA AGATAAAAAG GACGCAGACG CATTGTTCCC GTCGTTTGCT
GAGCGCGCCT ATCGTAGTGC CGAATTCAGC GAAGTCACTT GGGATGTAAA CGCGGCATAC
CAGTTTGATA ACGGTTTGAA CGTATACGCT CAAGTACAAA AAGGCTATCA AACAGGTGGT
TTCCCGCCGC GTCCATTTGG TGGTTCTGAC CAGTTCGTTC AGTTTGATGA AACTACATCT
GTCAATTACG AAACCGGTTT AAAAGGTAAG GTTGCTGAAA ATGTCTCTTT GCTTGCCGCT
ATATTTATCA CTAAATACGA CGACTTAGCA TTGCCTTTCT CTGACCCTAC AGCGGGTGGT
GGTTTTGTGA CTATCACAGA AAATGCGGGT AAATCTGAAG CCAAAGGCAT AGAGCTTGAA
GCCACGGTTG ATGTAACCGA TAATTTCTCG TTTCGCGCTG CGGTTGGTTT CTTAGATGCT
GAAATCACTC AAGTAGACGA AAATGTAAAC GGCGTTGGCG TAGGTGATTC ACCCGCCCTA
ACACCAGAAT GGACGCTCAT GATAGCGCCT TCTTACTACA TGGACTTAGA CAGCGGCGCT
ACACTAGCAT TTAAAGCGGA TTACTCGTTC CGTGATGAGA TGCAAGGCCA GTCAGTATTT
AACCCGAACG AAACGATCGA TTCTCGCAGT ATTCTTGGTT TTGATATCAA CTACACCTCG
GTCAATGGGG ACTGGTCATT AAGCCTTTAC GGCGAAAACG TCACGGATGA AATTTACGAC
CAAGGCCGCT TACAGCAAAA TGGTTTTGTA GGTATTGTAC GCAGTAATGA CAGACGTGAG
TTTGGTTTAC GTTTCAAGAA AGAATTTGAA ATGTAA
|
|---|
| Protein sequence | MGPQQNTHTR SRNISLLGAA ISLALAGHVS AQTTETEQAS NDDFENITVT ARKRTESLFE
SPTAITSLSD SFMEDANISN LDDVGKYVPN LNVSRYGGGN SAHASIFIRG IGLQDHIITT
DPGVGVYVDG VYLGRQMGAN LSLPNIASVE VLRGPQGTLY GRNTLGGAVN IITKKPGDES
MASVAAKVGT LGRVAADLYI NGDINDDVSI AASGSFKKRD GVGKAVNLAN PEKEIGEEQE
FSGRLSANWN VSNSFSLLFA VDGYDNESGQ SPYTIEFTDP SPDPTDVFNG DFPLLTPDLI
PSDPDDLGTT VPGLESTASA GWGASITANW DINENYATKL ITSFRSSDYE GGLDDDASPL
NLSEFPETGE ADQYSVELQV NGTFDNYDFV SGVYFFNEEG STSSGPWVFS PFNTPGALNN
DGTPTGFGGD YGFFDLHQET DAFAIYANAS YDVSEKLTVG GGLRYSKDKK DADALFPSFA
ERAYRSAEFS EVTWDVNAAY QFDNGLNVYA QVQKGYQTGG FPPRPFGGSD QFVQFDETTS
VNYETGLKGK VAENVSLLAA IFITKYDDLA LPFSDPTAGG GFVTITENAG KSEAKGIELE
ATVDVTDNFS FRAAVGFLDA EITQVDENVN GVGVGDSPAL TPEWTLMIAP SYYMDLDSGA
TLAFKADYSF RDEMQGQSVF NPNETIDSRS ILGFDINYTS VNGDWSLSLY GENVTDEIYD
QGRLQQNGFV GIVRSNDRRE FGLRFKKEFE M
|
|---|
| |