| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3625 |
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| Symbol | |
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| ID | 4175405 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4363701 |
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| End bp | 4364765 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638056655 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_663181 |
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| Protein GI | 109899926 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.110233 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACCTG ATCAAATGTT TAAGCGTTGG GTACACATTG CTCTTGCTGT GTTTGCTTTG
TCGTTTGCCT ACTTTTTAGC GGCAGATTTA TGGATGCCCG TTAGCACTCA GGCTAGGGTG
CTGCACCCTG TGGTGAATAT TTCTTCCAAG GTTAGCGGGC AGGTTAGTGA TGTGTTGGTT
GAAAATAATC AGCTAGTCGA AGCCGGACAG GTGTTATTTA GTCTAGATAA ACGTCCTTAC
GAAATTGCGG TGGACAAGGC TAAATTGGCG GTTGAAAGCG CCAGCCAAAC TAATCTACAA
CTTGACGCAT CTATTGCTGC AGCTGAGGCA CAGGCTTTAG CGTCAAAGGC CGACGTGGAA
GAGCTGAAGC TGGAAGTAGA GCGTGTGGAA AGCTTGATTA AATCCAACAC GGTTTCACGT
CAACTATACG ACCAAACCAA GGCCAACTAC CGGGTTGCAC AAGCCCAAGT CGAGGCTGCG
CAGGCAGACG TCGTCAAGTA TCGCGCTCAA CGGGGTAAAG ATGGCAATGA CAACTTATTG
CTTCGCCAAG CCGAAAATAC GCTGCAAAAT GCGCAATTGC AGCTAAATTA CGCCGATGTG
CGCTCACAAG TAACAGGGCG GGTGACAAAC CTACAACTGC AACCTGGAAA TTACGCTCAA
GCCGGCTCAA GTGTTGCCGC AGTCGTGGTC GAGAAAGGTG ACATTGTCGC TGATTTTAGA
GAAAAATCGT TAAGCCATGT GCAAATTGGC GATCTCGCCT CCATTGTATT TGATGCTCAC
CCTGGGCGTG TTTTTGACGG CCAAGTATCA GCTATTGATG CCGGGGTAAA AGACGGTCAG
ATAAGCGCTG ATGGCTCATT GGCTAATCCT GAAAACTCAG ATCGTTGGGT ACGTGATGCC
CAGTACATGC GTACGCATAT TACGTTACTT GAAGCGCCTG ATCTGCTGAA GTCATTGCCC
TCTGGGGCAC GGGCGACCGT ACAGCTTCAT CCTGTGGGTG GCTTAGCGAG TTGGTTGGGA
GCAGTGCAAG CCCACGTGAT CAGCATCATT CACTACATAT ACTAG
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| Protein sequence | MAPDQMFKRW VHIALAVFAL SFAYFLAADL WMPVSTQARV LHPVVNISSK VSGQVSDVLV
ENNQLVEAGQ VLFSLDKRPY EIAVDKAKLA VESASQTNLQ LDASIAAAEA QALASKADVE
ELKLEVERVE SLIKSNTVSR QLYDQTKANY RVAQAQVEAA QADVVKYRAQ RGKDGNDNLL
LRQAENTLQN AQLQLNYADV RSQVTGRVTN LQLQPGNYAQ AGSSVAAVVV EKGDIVADFR
EKSLSHVQIG DLASIVFDAH PGRVFDGQVS AIDAGVKDGQ ISADGSLANP ENSDRWVRDA
QYMRTHITLL EAPDLLKSLP SGARATVQLH PVGGLASWLG AVQAHVISII HYIY
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