| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3592 |
|---|
| Symbol | gcvT |
|---|
| ID | 4175372 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4324982 |
|---|
| End bp | 4326061 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638056622 |
|---|
| Product | glycine cleavage system aminomethyltransferase T |
|---|
| Protein accession | YP_663148 |
|---|
| Protein GI | 109899893 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase) |
|---|
| TIGRFAM ID | [TIGR00528] glycine cleavage system T protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAATA AAACGGTTTT GCACAGTAAG CACTTGGAAT CAGGCGCTAA GATGGTTGAT
TTTCACGGCT GGGAAATGCC GATCAACTAC GGCTCACAAA TAGAAGAGCA TCACGCTGTG
CGCCGCACTG CCGGTATGTT TGACGTATCT CACATGACCA TTGTTGATGT GGTTGGCGAG
CAAGCTCAAG ACTACCTTCG TCACTTATTA GCTAACGACG TAGCGAAATT GAAAGAGCGT
GGCAAGGCCC TTTACAGCGG CATGCTTAAC GAAGAAGGCG GCGTGGTAGA TGACCTGATT
GTGTATCACT TTGAAACCAC CAACTACCGC TTAGTCGTTA ACTCAGCCAC GCGCCAAAAA
GACATGGATT GGTTGAACGC GCAAGCAGAA GGCTTTGACG TCACTATTAC CGAACGCCCA
GAGTTCGCCA TGATCGCCGT ACAAGGCCCC CAAGCCAAAG AGAAAGCCGC AACCTTGTTT
TCATCAGCTC AAAATGAAGC CGTAGCAGGC ATGAAGCCGT TTTTTGGTGT GCAAGCTGAA
GATTTGTTCA TTGCGACCAC AGGTTACACA GGCGAAGCAG GTTACGAAAT AATGGTGCCT
AACGAGCAAG CCGCTGACTT TTGGCAAAAG CTATTAGATG CAGGCGTTGC TCCTTGTGGT
TTAGGCGCGC GCGATACCCT GCGCTTAGAA GCAGGCATGA ACCTTTATGG CCAAGATATG
GATGAAACCA TTTCACCCCT TGCAGCCAAC ATGGGCTGGA CCATCACATG GGAGCCAGCA
GAGCGTAACT TTGTCGGCCG TAAAGCCTTA GAAGCACAAA AAGCAGCCGG TACCGACAAA
CTAGTGGGCT TAGTGCTCAC TGAAAAAGGC GTACTTCGTC ACGGCCAAGC CGTACAAGTG
GAAGGCGGCG AAGGCATTAT CACCTCAGGT ACGTTCTCAC CCACATTAGG GCACAGTATT
GCCATGGCGC GTGTACCTGC TTCAGTAGGT GATACCGCAC AGGTGGAAAT GCGCAAAAAG
TGGGTTACAG TAAATGTGGT TAAACCCAGC TTTGTGCGAA ATGGCAAAAG CGTTTTATAA
|
|---|
| Protein sequence | MPNKTVLHSK HLESGAKMVD FHGWEMPINY GSQIEEHHAV RRTAGMFDVS HMTIVDVVGE
QAQDYLRHLL ANDVAKLKER GKALYSGMLN EEGGVVDDLI VYHFETTNYR LVVNSATRQK
DMDWLNAQAE GFDVTITERP EFAMIAVQGP QAKEKAATLF SSAQNEAVAG MKPFFGVQAE
DLFIATTGYT GEAGYEIMVP NEQAADFWQK LLDAGVAPCG LGARDTLRLE AGMNLYGQDM
DETISPLAAN MGWTITWEPA ERNFVGRKAL EAQKAAGTDK LVGLVLTEKG VLRHGQAVQV
EGGEGIITSG TFSPTLGHSI AMARVPASVG DTAQVEMRKK WVTVNVVKPS FVRNGKSVL
|
|---|
| |