| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3590 |
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| Symbol | |
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| ID | 4175370 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4321406 |
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| End bp | 4324315 |
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| Gene Length | 2910 bp |
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| Protein Length | 969 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638056620 |
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| Product | glycine dehydrogenase |
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| Protein accession | YP_663146 |
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| Protein GI | 109899891 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0403] Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain
[COG1003] Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain |
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| TIGRFAM ID | [TIGR00461] glycine dehydrogenase (decarboxylating) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.194839 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCACATG CTAATTTTTC CCTTTCGCAG TTAGAGCAAA CGCAAGATTT TATTCGCCGC
CATATTGGCC CAAGTGAAGC TGAAATGGCT GACATGTTGG AATGTGTTGG TGCCGACTCG
TTGAACGATT TAATGCAGCA AACCGTACCT GAAGGTATTC GTTTGCCAGA AAGCCTAAAC
GTGGGTGAAA GCCAAACTGA GGCACAAGCC TTGGCCTATT TGAAAACCGT GGCCAGCAAG
AACCAAGTAA ACCGTTCTTA CATTGGTATG GGTTACAGCG ATACCCTAAC CCCGAACGTT
ATTTTACGTA ACGTGCTAGA AAACCCAGGT TGGTACACAG CGTACACGCC CTATCAGCCG
GAAATCGCCC AAGGGCGTTT GCAAGCGCTG CTTAACTTTC AGCAAGTGAC CATTGATTTA
ACTGGAATGG AGCTTGCCTC TGCTTCATTG CTAGATGAAG CTACCGCTGC AGCTGAGGCC
ATGGGCCTTG CTAAACGCGT ATCGAAAAAC AAAAAATCAA ACCTGTTCTT TGTGGCCGAC
GATGTACACC CGCAAACCTT TGATGTGATT CAAACCCGTG CGGATATGTT CGGTTTTGAC
GTCGTTGTGG GCAAAGCGGC AGATGCAGCC AGCCATGATG TATTCGGTGC CTTGTTACAA
TACCCAGGCA CCACAGGGGC AGTAAATGAT TTAACCGACA TCATCGCCCA AGTTCAGGCA
AACAAAGGCA TAGTCGCGGT ATCGGCTGAT ATCATGAGCT TGGTACTACT TAAAGCGCCA
AGTGAAATGG GTGCAGACGT GGTGTTAGGC TCTGCTCAAC GTTTTGGCGT ACCTATGGGC
TACGGCGGGC CACACGCTGC GTTTTTCGCC ACGCGAGATG CCTACAAGCG CTCTTTACCT
GGGCGTATTA TTGGTGTGTC AAAAGACACG CGTGGTCGCC CAGCCTTGCG GATGGCACTG
CAAACGCGTG AGCAACATAT CCGCCGTGAA AAGGCCAACT CAAACATTTG TACTGCTCAG
GTGTTACTGG CCAACATGGC ATCGTTCTAC GCTGTGTACC ACGGCCCAGA TGGTTTAAAA
ACCATTGCGT CACGTATTCA CCGCTTTGCG GACATTCTTG CCGCTGGTAT TACTCAACAT
GCCGACAAAG GCGTGAGTCT GGCCAATAGC ACGTGGTTCG ACACCATTAC CGTGAATGTT
GGCGACAAAA AAGACGCGAT CGTGGCTGCA GCTCATGCCG CGCAAATGAA TTTACGCACC
GATTTAGACG GCGCTGTGGG TATCAGCCTT GATGAGACCA CCACCCGGGA TGACCTACAA
AACCTGTTCA ACGTGTTGTT AGGCGACGAT CATGGTTTAG ACATTAACCA ACTTGATCAG
CAAATTGTGG CGAAAGGCAG TCAGTCCATT CCGACTGATT TAGTGCGCAC CAGCGACATT
TTGACCCACG AAGTGTTCAA CAGCTACCAG TCAGAAACTG AAATGCTGCG TTATATCAAA
TCACTAGAAG ACAAAGATTT AGCGCTTAAT CACTCGATGA TAAGCTTAGG TTCGTGCACC
ATGAAACTGA ATGCCACCGC TGAAATGATC CCAGTGACGT GGCCTGAGTT TGGTAAATTG
CACCCGTTCG CGCCTATCGA ACAAGCACAA GGCTACAGCC AAATGCTCAG CGAATTAAGC
GAATGGTTGC TAGATATCAC AGGTTACGAT GCGCTTTCAA TGCAGCCCAA CTCAGGTGCA
CAGGGCGAAT ACGCTGGTCT TATCGCTATT CAGCGTTACC ACGAAAGCCG CAACGAAGGG
CATCGTAATA TTTGCCTTAT CCCAAGCTCT GCACACGGCA CTAACCCAGC GTCAGCGCAA
ATGGTCAGCC TGAAAGTGGT GGTGGTGAAC TGTGATAAAA ACGGCAACGT CGATTTAGCC
GATTTACGCA AGAAAGCCGC AGAAGTGGCA GACAACCTGT CTTGCGCCAT GATCACCTAC
CCATCTACCC ATGGTGTGTA CGAAGAAACC ATCAAAGAAA TGTGCGACAT AGTGCACGAA
TTTGGTGGTC AGGTGTATCT TGACGGTGCC AACATGAACG CACAGGTAGG CATTACCTCA
CCTGGCTACA TTGGCTCTGA TGTATCGCAC TTAAACTTGC ACAAAACCTT CTGCATTCCA
CACGGTGGCG GCGGCCCAGG TATGGGGCCA ATCGGTGTTA AATCCCATTT AGCCCCGTTT
TTGCCAAACC ATAAAGTGAT CGACACAGGC AACACCAGTG CCGGCAATGG CGCAGTATCT
GCAGCGCCTT GGGGCAGTGC ATCCATTTTG CCCATCAGCT ACATGTACAT CAAAATGATG
GGCAGTGCAG GGCTTAAAAA GGCTACCGAA GTAGCAATTT TAAACGCTAA CTACATCGCC
AATAAGCTAG ACGGCCACTA CAACGTCTTG TATCGCGGGC GAAATGGCCG CGTAGCACAC
GAATGTATTA TCGACTTGCG CCCTATTAAA GAAGCATCAG GCGTCACCGA AGTCGACATC
GCCAAGCGCT TAAACGATTA CGGCTTCCAC GCACCGACCA TGAGCTTCCC AGTAGCGGGT
ACACTGATGA TCGAACCAAC GGAATCAGAA GCCAAAGTCG AGCTAGACCG CTTCATCGAA
GCCATGGTAT GCATTCGCGC AGAAGCGGCA AAAGTAGAAT CAGGTGAGTG GAGCGCAACA
GACAACCCAT TATACAACGC ACCGCACACC CTAGATGATA TTTGCGACGC CAACTGGGAT
CGCAGTTACG ATCGTCACAC AGCGGCATAC CCGGTCGCCA GCGTAGCGAA AAACAAATTC
TGGCCTTCGG TTAACCGCAT CGATGATGTG TTCGGGGATC GCAATTTGAT TTGTTCTTGC
CCGAGTATTG AGAGTTATAT AGAAGAGTAG
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| Protein sequence | MPHANFSLSQ LEQTQDFIRR HIGPSEAEMA DMLECVGADS LNDLMQQTVP EGIRLPESLN
VGESQTEAQA LAYLKTVASK NQVNRSYIGM GYSDTLTPNV ILRNVLENPG WYTAYTPYQP
EIAQGRLQAL LNFQQVTIDL TGMELASASL LDEATAAAEA MGLAKRVSKN KKSNLFFVAD
DVHPQTFDVI QTRADMFGFD VVVGKAADAA SHDVFGALLQ YPGTTGAVND LTDIIAQVQA
NKGIVAVSAD IMSLVLLKAP SEMGADVVLG SAQRFGVPMG YGGPHAAFFA TRDAYKRSLP
GRIIGVSKDT RGRPALRMAL QTREQHIRRE KANSNICTAQ VLLANMASFY AVYHGPDGLK
TIASRIHRFA DILAAGITQH ADKGVSLANS TWFDTITVNV GDKKDAIVAA AHAAQMNLRT
DLDGAVGISL DETTTRDDLQ NLFNVLLGDD HGLDINQLDQ QIVAKGSQSI PTDLVRTSDI
LTHEVFNSYQ SETEMLRYIK SLEDKDLALN HSMISLGSCT MKLNATAEMI PVTWPEFGKL
HPFAPIEQAQ GYSQMLSELS EWLLDITGYD ALSMQPNSGA QGEYAGLIAI QRYHESRNEG
HRNICLIPSS AHGTNPASAQ MVSLKVVVVN CDKNGNVDLA DLRKKAAEVA DNLSCAMITY
PSTHGVYEET IKEMCDIVHE FGGQVYLDGA NMNAQVGITS PGYIGSDVSH LNLHKTFCIP
HGGGGPGMGP IGVKSHLAPF LPNHKVIDTG NTSAGNGAVS AAPWGSASIL PISYMYIKMM
GSAGLKKATE VAILNANYIA NKLDGHYNVL YRGRNGRVAH ECIIDLRPIK EASGVTEVDI
AKRLNDYGFH APTMSFPVAG TLMIEPTESE AKVELDRFIE AMVCIRAEAA KVESGEWSAT
DNPLYNAPHT LDDICDANWD RSYDRHTAAY PVASVAKNKF WPSVNRIDDV FGDRNLICSC
PSIESYIEE
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