Gene Patl_3571 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3571 
Symbol 
ID4175351 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp4294015 
End bp4294713 
Gene Length699 bp 
Protein Length232 aa 
Translation table11 
GC content47% 
IMG OID638056601 
Producttwo component transcriptional regulator 
Protein accessionYP_663127 
Protein GI109899872 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000262211 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGCACA TATTACTTGT TGAGGATGAC GCGCGACTCA GCCAGCTTGT GAGTGAATAC 
TTGAACCAAC ATGATTTCAC CGTGACCAGT TTAAGTGACG GCACGGGTTT GCTTGATGAG
ATTAAACAAC ATTCGCCAGA TTTGGTTGTG CTTGACGTTA TGCTACCGGG GGATAACGGC
TTTACGTTGT GCAAAAAAAT TCGCCCTGAA TATCAAGGAC CGCTGTTGTT TATGACGGCA
AAAAATAGCG ATTTTGATCA TGTACTCGGC CTTGAGATTG GCGCAGATGA TTACGTTATG
AAACCGGTCG AACCCCGGGT GCTGTTAGCG CGTATTCAAG CGCTGCTGAG ACGAAGTAAT
ACTATTAAAG CCCCAATTGA GAGAGCGACC CAACTGCGTT TTGGTCAGCT AACGCTTGAT
TATCTAGCAC GCAAGGTGAC CCTTAAAAAC GAAGATGTGC CCCTAACCAG CCATGAATTC
GATATGCTCT GGAAGTTAGC CGCAAATGCG TCCCAGCTAG TGGATCGCAA TACGCTATAC
CGCGAGCTTA TCGGCAGAGA ATATGATGGT TTAGACCGCT CAGCGGATGT GCGCATTTCG
CGTCTGCGTA AAAAACTGCA GGATGACCCT CGTCATCCCT ATCGTATTAA AACCATCTGG
GGAAAAGGGT TTTATTTCGT CGCTGACGCG TGGGAATAA
 
Protein sequence
MPHILLVEDD ARLSQLVSEY LNQHDFTVTS LSDGTGLLDE IKQHSPDLVV LDVMLPGDNG 
FTLCKKIRPE YQGPLLFMTA KNSDFDHVLG LEIGADDYVM KPVEPRVLLA RIQALLRRSN
TIKAPIERAT QLRFGQLTLD YLARKVTLKN EDVPLTSHEF DMLWKLAANA SQLVDRNTLY
RELIGREYDG LDRSADVRIS RLRKKLQDDP RHPYRIKTIW GKGFYFVADA WE