| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3566 |
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| Symbol | |
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| ID | 4175346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4288432 |
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| End bp | 4290117 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638056596 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_663122 |
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| Protein GI | 109899867 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0665818 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAAAC AACTCCCAGC TATCAGCAAA CCCGGTAAAA CGTTAAAGGC GCGTATACCT
CTTAGCAGCG TATTTGCAAT AGCGTTTGTT AGTGTGTTCG CCATTTTTAT CAGTGTGACT
ATATTAGCCC ATTCACGCCT GAGTGATTTT CGTGAAATCC TCGATAACCT TGCGAATAAA
TCGTTGCCCA ACGTAGTATT TTCAGAGCAA ATAAACAACC ATATCACTGC CCTTTCAGCC
ATCAGTGATG GCTTGAGTTA TGCCAATTCT GAGGCGGCAC TGCGTATCGC TGAACGGCAT
GTTAATGACA AGATGGAGCA GATTCGAACT GTTGCTGAGC GTCACGGAGG CACCCAATAC
CTTGATTTTC ACTTGAATGC GATTGAAAGC GAAATTCTAG AGTTAAAAAC CATCGCGCTA
CACAGAATCA AGCTTGCCAA GCAACTTGCT GTGCAGCAAA AAGCCTTGTA TGCACTCAAT
AACAGAGTGG TTAAAATCAC TACTGCCCCA TCATTGTCGA AAAAGGATAT TCAAGGTTTG
CAAGATTGGC GTGCCTCATT GTATGAAGCT GTTGCCCTAT CTAGTAATGC CGCCAACTTG
ACTCGGTTAC AAGCTATCCG CCAATCGTCC TTTGCGGCTC AAACCATCAC TGATACTTTG
TATAAAAACG CTAATGCGTT GCCTATTTCC TTGCGCCCGA GATTAATTAA GATCGTCGAT
GAATTCACCC ATATCGCCCT TCGTGATCAA GGAATATTTC CGTTACAAAT TAACCTGTTG
CGTATATCAG GCCGGGTGAC CGGGCGCGGC AACTTTGTGC ATAGTTTGAT CACCGATTAC
GCACGTCTAC TCAACTTTAA GTCTTATCAA TTGAGTGATT CCCTTATCAC TCAAACAAGC
AGAACCTCTA CCCGAATCAA AGAACAAATA GACAATGTGG GGCTGTACGT CATTGGCGCA
CTCATTTTGC TGTTAGTCAT TGTATTCTTT ATTCAAAATC GCGTGGTTAG ACGCTTAGTT
CAGCTTAATA TGGTGGTTCA AGACAGGGCC AACGGTTTTA GCAATACTAC GCATATCTCA
GGCAATGATG AAATATCTGA CATTGCCGAT ACCATCGACT ATTTTGCCAC GACCATCGAG
CAGCAAAAGC TCGCCTTACA AGAACTATCA CTGTTAGATG GATTAACGGG TATCCCCAAT
CGCAGAGCGT TAGATGAACG ATTAGAGCGT GAGTTAAGGC TAGCGAACCG AGAAAAATGG
TCCCTGTCGT TACTGATGAT TGATGTGGAT TATTTCAAAC TTTACAATGA CAATTATGGT
CATGCCGCAG GCGACACAGC TCTGGTAGCG ATTGCGCAAT TGCTGGAAAG ATTCGCCCAA
CGCAGTGGTG ACTTTGCCGC CAGATACGGC GGTGAAGAAT TCGTATTTAT TTTGCCTAAT
ACAGATAAAG ATGGTGCGAT AAGAGTTGCC ACGGCGCTAT TAGAAGCCGT GCGTGATGCA
AACCTTGAGC ATAAATACAG TCCCAAAGAA GAACATTTGA CCATCAGTAT CGGCGTGTCA
ACCTGTCAAC CGCAAGATCC GAAAGACGCA GACTATGTTC AACGTTTAGC GGATCACGCA
CTTTATTCAG CCAAACAAAG TGGTCGCGAC CGGATGGTGC ATTATTCGGA TATTATCACC
TCGTAG
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| Protein sequence | MSKQLPAISK PGKTLKARIP LSSVFAIAFV SVFAIFISVT ILAHSRLSDF REILDNLANK
SLPNVVFSEQ INNHITALSA ISDGLSYANS EAALRIAERH VNDKMEQIRT VAERHGGTQY
LDFHLNAIES EILELKTIAL HRIKLAKQLA VQQKALYALN NRVVKITTAP SLSKKDIQGL
QDWRASLYEA VALSSNAANL TRLQAIRQSS FAAQTITDTL YKNANALPIS LRPRLIKIVD
EFTHIALRDQ GIFPLQINLL RISGRVTGRG NFVHSLITDY ARLLNFKSYQ LSDSLITQTS
RTSTRIKEQI DNVGLYVIGA LILLLVIVFF IQNRVVRRLV QLNMVVQDRA NGFSNTTHIS
GNDEISDIAD TIDYFATTIE QQKLALQELS LLDGLTGIPN RRALDERLER ELRLANREKW
SLSLLMIDVD YFKLYNDNYG HAAGDTALVA IAQLLERFAQ RSGDFAARYG GEEFVFILPN
TDKDGAIRVA TALLEAVRDA NLEHKYSPKE EHLTISIGVS TCQPQDPKDA DYVQRLADHA
LYSAKQSGRD RMVHYSDIIT S
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