Gene Patl_3564 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3564 
SymbolvalS 
ID4175344 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp4283833 
End bp4286598 
Gene Length2766 bp 
Protein Length921 aa 
Translation table11 
GC content47% 
IMG OID638056594 
Productvalyl-tRNA synthetase 
Protein accessionYP_663120 
Protein GI109899865 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0525] Valyl-tRNA synthetase 
TIGRFAM ID[TIGR00422] valyl-tRNA synthetase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATAAAA CATTTAGCCC ACAAAACATT GAACAGCAAT GCTACCAAGC GTGGGAAGAT 
AAAGGCTATT TTAAAGCCAG CGGCGAAGGC CAACCTTACT GCATATTACT ACCGCCCCCC
AACGTGACTG GCAGCTTACA CATGGGCCAT GGTTTTCAAC AAACCATCAT GGATACGCTA
ACTCGTTATC ACCGTATGAA GGGTGACAAT ACCTTATGGC AATGCGGTAC CGACCACGCG
GGCATTGCCA CGCAGATGGT GGTAGAACGT CAGTTAAACG CCCAAGGTAA AACCCGTCAC
GACTTAGGTC GTGAAGCGTT CGTTGAAAAA ATTTGGGACT GGAAGAAAGA ATCTGGTGGC
AACATAACCC AACAGATGCG CCGTTTAGGT ACGTCACCCG ATTGGGATCG TGAAGTATTC
ACCATGGATG ACGACTTATC GGAAGCCGTG AACGAAGTAT TTGTTCGCTT GCACGAAGAA
GGCCTGATTT ACCGCGGCAA ACGCTTAGTC AACTGGGATC CGGTATTGCA CACTGCGGTA
TCAGATTTAG AAGTACTTAG CGAAGAAGAA AATGGCTTCA TGTGGCATAT GCGCTACCCA
TTAGCCGATG GCACAGGTGA GCTGATTGTC GCCACCACGC GCCCCGAAAC CATGCTGGGT
GACACAGCCG TTGCGGTTCA CCCTGATGAT GAGCGTTACC AAGGCTTTAT CGGTAAGCAA
ATCAAGCTGC CGATTACAGG CCGTCTTATT CCGATCATCG CAGATGACTA CGTTGAGCAA
GACTTCGGTA CTGGCTGCGT AAAAATTACC CCTGCCCATG ATTTCAACGA TTACGACATG
GGTAAACGTC ATAACCTAGA GATGATAAAC ATTCTCACCG ATGACGCCAA AATTAACGAT
GTTGCCCCTG AGCAATACCG TGGCCTTGAC CGCTTTGATG CACGTAAGCA AATCGTCGCT
GATTTAGACG CCGCAGGCGT ATTGGTTAAG ATTGAAGACC ACAAATTAAA AGTGCCCCGA
GGCGATCGCT CTGGCTCGGT TATCGAACCT TATTTAACCG ATCAGTGGTA TGTGGCAGTT
CAAGAGCTAG CGAAACCCGC AATTGATGCC GTGAAAAGTG GCGAGATTAA ATTCGTTCCT
GAAAACTGGG ACAAAACCTA TTACCAGTGG ATGAACAACA TTCAAGACTG GTGTATTTCA
CGCCAACTTT GGTGGGGTCA TCGCATACCT GCTTGGTATG ACGAAAATGG CAAAATCTAC
GTTGGCCGCA CAGAAGCTGA AGTACGCGAA AAGAACGGCC TTGATGCCAG CGTCACATTG
CGCCAAGACG AAGACGTGTT AGATACGTGG TTCTCTTCTG CCCTATGGCC ATTTGCTACT
ATGGGCTGGC CAAAGAAAAC CCCAGAGCTT GATACTTTTG TACCTAGCGC CGTATTGGTT
ACCGGTTTCG ATATTATTTT CTTCTGGGTA GCCAGAATGA TCATGATGAC CAAGAAATTC
ACTGGGCAAA TTCCGTTTAA AGAAATTTAT ATCACCGGGC TTATCCGCGA CGAGCAAGGC
GATAAAATGT CTAAATCGAA AGGCAATGTT ATCGACCCTA TCGATTTGAT TGACGGTATC
AGTATTGATG ACTTAGTCGC CAAGCGCACC TCAGGCATGA TGCAACCTAA ACTAGCCGCT
AAAATCGAAA AGAATACCCG CAAGAGCTAC CCAGAAGGCT TTGCTGCTTA TGGCACCGAT
GCATTGCGCT TTACGTTTGC TGCGATGGCG TCTACCAGTC GCGACATCAG CTTTGATGTG
AAGCGAGTTG AAGGCTATCG CAACTTCTGT AACAAGTTAT GGAACGCATC GCGTTTTGTG
ATGATGAACG CTGAAGACCA AGACACTGGC GCAAATGGCG GCGACATGGA GCTTAGCCTA
GCGGATAAGT GGATTTTGGC GCGCTTCCAG CAAACCTTGA AAGACTTTGA AGATGCCTTA
ACGGGTTATC GTTTCGATAT TGCAGCGAAC TTGGTGTACG AGTTCACTTG GAATCAATTC
TGTGATTGGT ACTTAGAGCT ATCGAAGCCG GTACTTAACT CTGAAGTGAG CACTGACGCG
CAAAAACGCG GTACCCGCCA TACATTGGTC AATGTACTTG AAAGCATTTT GCGTTTAGCG
CATCCGATTA TGCCGTTTAT CACAGAAGAG ATATGGCAGA GGTTGGCGCC GCTATGCGGC
ATTCAAGCCG ACAGCATCAT GACTCAGCCA TTCCCAGCAC AAAGCGAAGC GCTGCGCGAC
GAAGACACAC TGGCTGAAAT GGAGTGGATC AAAAGCGTGA TTGTGGGCAT TCGTAATATT
CGCGGCGAAA TGGATATCTC ACCTAATAAA CCGTTAAATG TGTTGCTTCG TAACGCCAGT
GCTCAAGATT GGCAACGTTT GCAAAGCAGC CGTGAGTTTT TAGGGGCGCT AGCCAAACTT
GAAAGCGTTG AATTGTTGCA GCCAGAAGAA GAAGCCCCTG CCAGTGCTAC CGCGCTAGTA
GGTGAGATGG AGATTCTTAT TCCTATGGCT GGGCTAATAG ATAAAGACGC AGAACTGGCC
CGGATTAACC GTGCGTTAGC AAAAATTGAA GCTGACTTTG GCCGTACTCA AGGTAAATTG
AGCAACGAAA AATTCGTTAG CAATGCACCA CCAGCGGTCA TTGATAAAGA AAAAGCCAAG
CTTGATGACT TCACCATGCA AATGACGAAG TTGAAAGAGC AGAAACAAAC CATTGAAAAT
TTGTAA
 
Protein sequence
MDKTFSPQNI EQQCYQAWED KGYFKASGEG QPYCILLPPP NVTGSLHMGH GFQQTIMDTL 
TRYHRMKGDN TLWQCGTDHA GIATQMVVER QLNAQGKTRH DLGREAFVEK IWDWKKESGG
NITQQMRRLG TSPDWDREVF TMDDDLSEAV NEVFVRLHEE GLIYRGKRLV NWDPVLHTAV
SDLEVLSEEE NGFMWHMRYP LADGTGELIV ATTRPETMLG DTAVAVHPDD ERYQGFIGKQ
IKLPITGRLI PIIADDYVEQ DFGTGCVKIT PAHDFNDYDM GKRHNLEMIN ILTDDAKIND
VAPEQYRGLD RFDARKQIVA DLDAAGVLVK IEDHKLKVPR GDRSGSVIEP YLTDQWYVAV
QELAKPAIDA VKSGEIKFVP ENWDKTYYQW MNNIQDWCIS RQLWWGHRIP AWYDENGKIY
VGRTEAEVRE KNGLDASVTL RQDEDVLDTW FSSALWPFAT MGWPKKTPEL DTFVPSAVLV
TGFDIIFFWV ARMIMMTKKF TGQIPFKEIY ITGLIRDEQG DKMSKSKGNV IDPIDLIDGI
SIDDLVAKRT SGMMQPKLAA KIEKNTRKSY PEGFAAYGTD ALRFTFAAMA STSRDISFDV
KRVEGYRNFC NKLWNASRFV MMNAEDQDTG ANGGDMELSL ADKWILARFQ QTLKDFEDAL
TGYRFDIAAN LVYEFTWNQF CDWYLELSKP VLNSEVSTDA QKRGTRHTLV NVLESILRLA
HPIMPFITEE IWQRLAPLCG IQADSIMTQP FPAQSEALRD EDTLAEMEWI KSVIVGIRNI
RGEMDISPNK PLNVLLRNAS AQDWQRLQSS REFLGALAKL ESVELLQPEE EAPASATALV
GEMEILIPMA GLIDKDAELA RINRALAKIE ADFGRTQGKL SNEKFVSNAP PAVIDKEKAK
LDDFTMQMTK LKEQKQTIEN L