Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3564 |
Symbol | valS |
ID | 4175344 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 4283833 |
End bp | 4286598 |
Gene Length | 2766 bp |
Protein Length | 921 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638056594 |
Product | valyl-tRNA synthetase |
Protein accession | YP_663120 |
Protein GI | 109899865 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0525] Valyl-tRNA synthetase |
TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATAAAA CATTTAGCCC ACAAAACATT GAACAGCAAT GCTACCAAGC GTGGGAAGAT AAAGGCTATT TTAAAGCCAG CGGCGAAGGC CAACCTTACT GCATATTACT ACCGCCCCCC AACGTGACTG GCAGCTTACA CATGGGCCAT GGTTTTCAAC AAACCATCAT GGATACGCTA ACTCGTTATC ACCGTATGAA GGGTGACAAT ACCTTATGGC AATGCGGTAC CGACCACGCG GGCATTGCCA CGCAGATGGT GGTAGAACGT CAGTTAAACG CCCAAGGTAA AACCCGTCAC GACTTAGGTC GTGAAGCGTT CGTTGAAAAA ATTTGGGACT GGAAGAAAGA ATCTGGTGGC AACATAACCC AACAGATGCG CCGTTTAGGT ACGTCACCCG ATTGGGATCG TGAAGTATTC ACCATGGATG ACGACTTATC GGAAGCCGTG AACGAAGTAT TTGTTCGCTT GCACGAAGAA GGCCTGATTT ACCGCGGCAA ACGCTTAGTC AACTGGGATC CGGTATTGCA CACTGCGGTA TCAGATTTAG AAGTACTTAG CGAAGAAGAA AATGGCTTCA TGTGGCATAT GCGCTACCCA TTAGCCGATG GCACAGGTGA GCTGATTGTC GCCACCACGC GCCCCGAAAC CATGCTGGGT GACACAGCCG TTGCGGTTCA CCCTGATGAT GAGCGTTACC AAGGCTTTAT CGGTAAGCAA ATCAAGCTGC CGATTACAGG CCGTCTTATT CCGATCATCG CAGATGACTA CGTTGAGCAA GACTTCGGTA CTGGCTGCGT AAAAATTACC CCTGCCCATG ATTTCAACGA TTACGACATG GGTAAACGTC ATAACCTAGA GATGATAAAC ATTCTCACCG ATGACGCCAA AATTAACGAT GTTGCCCCTG AGCAATACCG TGGCCTTGAC CGCTTTGATG CACGTAAGCA AATCGTCGCT GATTTAGACG CCGCAGGCGT ATTGGTTAAG ATTGAAGACC ACAAATTAAA AGTGCCCCGA GGCGATCGCT CTGGCTCGGT TATCGAACCT TATTTAACCG ATCAGTGGTA TGTGGCAGTT CAAGAGCTAG CGAAACCCGC AATTGATGCC GTGAAAAGTG GCGAGATTAA ATTCGTTCCT GAAAACTGGG ACAAAACCTA TTACCAGTGG ATGAACAACA TTCAAGACTG GTGTATTTCA CGCCAACTTT GGTGGGGTCA TCGCATACCT GCTTGGTATG ACGAAAATGG CAAAATCTAC GTTGGCCGCA CAGAAGCTGA AGTACGCGAA AAGAACGGCC TTGATGCCAG CGTCACATTG CGCCAAGACG AAGACGTGTT AGATACGTGG TTCTCTTCTG CCCTATGGCC ATTTGCTACT ATGGGCTGGC CAAAGAAAAC CCCAGAGCTT GATACTTTTG TACCTAGCGC CGTATTGGTT ACCGGTTTCG ATATTATTTT CTTCTGGGTA GCCAGAATGA TCATGATGAC CAAGAAATTC ACTGGGCAAA TTCCGTTTAA AGAAATTTAT ATCACCGGGC TTATCCGCGA CGAGCAAGGC GATAAAATGT CTAAATCGAA AGGCAATGTT ATCGACCCTA TCGATTTGAT TGACGGTATC AGTATTGATG ACTTAGTCGC CAAGCGCACC TCAGGCATGA TGCAACCTAA ACTAGCCGCT AAAATCGAAA AGAATACCCG CAAGAGCTAC CCAGAAGGCT TTGCTGCTTA TGGCACCGAT GCATTGCGCT TTACGTTTGC TGCGATGGCG TCTACCAGTC GCGACATCAG CTTTGATGTG AAGCGAGTTG AAGGCTATCG CAACTTCTGT AACAAGTTAT GGAACGCATC GCGTTTTGTG ATGATGAACG CTGAAGACCA AGACACTGGC GCAAATGGCG GCGACATGGA GCTTAGCCTA GCGGATAAGT GGATTTTGGC GCGCTTCCAG CAAACCTTGA AAGACTTTGA AGATGCCTTA ACGGGTTATC GTTTCGATAT TGCAGCGAAC TTGGTGTACG AGTTCACTTG GAATCAATTC TGTGATTGGT ACTTAGAGCT ATCGAAGCCG GTACTTAACT CTGAAGTGAG CACTGACGCG CAAAAACGCG GTACCCGCCA TACATTGGTC AATGTACTTG AAAGCATTTT GCGTTTAGCG CATCCGATTA TGCCGTTTAT CACAGAAGAG ATATGGCAGA GGTTGGCGCC GCTATGCGGC ATTCAAGCCG ACAGCATCAT GACTCAGCCA TTCCCAGCAC AAAGCGAAGC GCTGCGCGAC GAAGACACAC TGGCTGAAAT GGAGTGGATC AAAAGCGTGA TTGTGGGCAT TCGTAATATT CGCGGCGAAA TGGATATCTC ACCTAATAAA CCGTTAAATG TGTTGCTTCG TAACGCCAGT GCTCAAGATT GGCAACGTTT GCAAAGCAGC CGTGAGTTTT TAGGGGCGCT AGCCAAACTT GAAAGCGTTG AATTGTTGCA GCCAGAAGAA GAAGCCCCTG CCAGTGCTAC CGCGCTAGTA GGTGAGATGG AGATTCTTAT TCCTATGGCT GGGCTAATAG ATAAAGACGC AGAACTGGCC CGGATTAACC GTGCGTTAGC AAAAATTGAA GCTGACTTTG GCCGTACTCA AGGTAAATTG AGCAACGAAA AATTCGTTAG CAATGCACCA CCAGCGGTCA TTGATAAAGA AAAAGCCAAG CTTGATGACT TCACCATGCA AATGACGAAG TTGAAAGAGC AGAAACAAAC CATTGAAAAT TTGTAA
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Protein sequence | MDKTFSPQNI EQQCYQAWED KGYFKASGEG QPYCILLPPP NVTGSLHMGH GFQQTIMDTL TRYHRMKGDN TLWQCGTDHA GIATQMVVER QLNAQGKTRH DLGREAFVEK IWDWKKESGG NITQQMRRLG TSPDWDREVF TMDDDLSEAV NEVFVRLHEE GLIYRGKRLV NWDPVLHTAV SDLEVLSEEE NGFMWHMRYP LADGTGELIV ATTRPETMLG DTAVAVHPDD ERYQGFIGKQ IKLPITGRLI PIIADDYVEQ DFGTGCVKIT PAHDFNDYDM GKRHNLEMIN ILTDDAKIND VAPEQYRGLD RFDARKQIVA DLDAAGVLVK IEDHKLKVPR GDRSGSVIEP YLTDQWYVAV QELAKPAIDA VKSGEIKFVP ENWDKTYYQW MNNIQDWCIS RQLWWGHRIP AWYDENGKIY VGRTEAEVRE KNGLDASVTL RQDEDVLDTW FSSALWPFAT MGWPKKTPEL DTFVPSAVLV TGFDIIFFWV ARMIMMTKKF TGQIPFKEIY ITGLIRDEQG DKMSKSKGNV IDPIDLIDGI SIDDLVAKRT SGMMQPKLAA KIEKNTRKSY PEGFAAYGTD ALRFTFAAMA STSRDISFDV KRVEGYRNFC NKLWNASRFV MMNAEDQDTG ANGGDMELSL ADKWILARFQ QTLKDFEDAL TGYRFDIAAN LVYEFTWNQF CDWYLELSKP VLNSEVSTDA QKRGTRHTLV NVLESILRLA HPIMPFITEE IWQRLAPLCG IQADSIMTQP FPAQSEALRD EDTLAEMEWI KSVIVGIRNI RGEMDISPNK PLNVLLRNAS AQDWQRLQSS REFLGALAKL ESVELLQPEE EAPASATALV GEMEILIPMA GLIDKDAELA RINRALAKIE ADFGRTQGKL SNEKFVSNAP PAVIDKEKAK LDDFTMQMTK LKEQKQTIEN L
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