| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3550 |
|---|
| Symbol | |
|---|
| ID | 4175329 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4266405 |
|---|
| End bp | 4269629 |
|---|
| Gene Length | 3225 bp |
|---|
| Protein Length | 1074 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638056579 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_663106 |
|---|
| Protein GI | 109899851 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCATTCA AAAATTTAGC TTCAACGTTC AGCAAGCAAG CAAAGTGGGT ACGTATTGCT
ACTTATCTGG TTATTGCTTA TCTCCTTTAT GCACTGATTT TAGGTGTTAT CACGCCGCTG
GTGTTGCAAT CTCAGTTGCC CAGTGTGCTA AGTGAAAAAA CAGGGCGTGA TGTAAACATC
GAAAAAATAC GCATTAATCC CTTTTTATTG CGCGTCCGGG TAACGAATAT TCAAATTAAC
GAACAAGCTA GCAATGAGCC TTTTGTGCGC GTTGCGTTAT TAGAGCTAGA TGCAGGATTT
TGGCAATCGT TATTACACCT GACACCAGCG GTTGAACATG TGTTTATAGA AAAGCCATAT
GCTCACGTAG CACGCACAGC GGGTGGCGAT AATACTCGTT TTAATTTCAC TGGTATGATT
GAAGCGCTTT CTCAAAATGG CGATAAGCAA CCGCAGGAGG ATGAAGCGAC TAGCGAAATC
CCACATATTC GCCTTGGATT ATTCCGACTT TCAAACGGCC ACGTGATGCT GTCAGACAAG
GTGACAGGCA CTCAAATCAA TTACCCAGAG TTAGGGTTCG AATTAACCGA CCTAGATACA
CTCGCGTCAA TCACGGTACC TGCCACAAAG AGGGATGCCC TTCTACCCGA AAATCACTAT
GCGTTTACCT TACTAACCGA TGAGGGCGGG GCGGTTCATC TTGACGGGCA ATTTCAATTG
TCGCCCGTTG ACGTCAAAGG GAAAATCGAA TTAGAGAGTA TTGCCCTGCC GCCTTTGTGG
CCATTGTCGA ATGCATTAAT GGCAGCAAAA CTCACAAGCG GACTGTTAGA TCTTAATTTG
AACTATGCCG TGACACAGGG TGATAGCGAC ATGCATTTAC AAGTTAACCG TGCGCAACTG
CGCGTTTCGG ACTTGACGAT GAGTGATGCG ACGAGTCAGC CTAAAATTAA TATCGCAGGT
ATACACATAA ACGATTTTGA ACTTGATACT GCTACGCAGC AGATTGATAT TAATAGTATT
CGAATCGATG AACCGTGGTT TGAAGCGAGC CTCGATAAAA ACGGTGTGGA TCTGGTTGCT
TTACTGACGC CGAAATCAGA AACATCTTCT GCTTCGAACG CTGAATTCAA TACAGAATCG
ATAGCTGAAC CTAAAACGAA GCCACAATCA GAGCCTGAGC CAGAGGCTAA AACTGCTCAG
GGCACAGAGC CACAAAACGA GTCTCGAACG GAATCACAGG CTGCATCTGT TTCACCCAAG
CCCGCCGAGC CCGCATGGCG TGTCATCTTG CAATCATTTG CATTAAATAA TGGTGGGGTT
GATGTAAATG AAAGTATGGT TGCTGACGAC GTTCACTGGC GCGTGTTTGA TATCAATGCC
TCGACAGGGG TAATCGATAC GCGTTTTGAA AGCCCTATTG ATTATACATT ACAGCTCGGG
GTAGCAAGTG ATGCTACTAA GCGCCCAACG AGTGCATCAG GTAAGTTTGC GACTAACGGT
AAGGTTATGG TTGCGGAGCA AAAACTGTCC GGTTCGGTAG ATTTTAGCCA GTTCGCCTTG
TCGCAATTAC AGCCTTACAT CTCACAGTAT TTAAACGTCA ACATGCAACA GGGAGACGCT
GGCGTATCGG GTACATTTGC TGCTGGTGCA AATAGCCCTA TTAGCTTTAC GGGGCAGGCT
GGCGTGAGTG CGCTTGTGGT CACCGACGGC CCCAAGCAAG AGCCGCTGCT TAAATGGCAA
GATATGCAAG TGGCTGGCAT TCAATACGAC TCACAGAAAC GCGCATTCTC ACTACAAAAA
ATCGCCTTTG ATAAGCCTTT CGCCAAACTA GTGATTGATA AAGATAAAAA TACCAATATC
AGTGATTTGG TTGTACAGCA AGCTGCAAAT GATGGGATCA CTGAGCATGC ACCAGCAACT
GATGACAGTA GTGATACAGC ACATCAATCT GACCAGCAAA CATCACTTGA AACAGCACCT
GCAATGGCGA TTAATATCGG TGAAATTCGC CTGCTCGGTG GCAGCGCTTA CTTTGAAGAT
AATTCACTAA GGCCGCGTTT TGCATCCAGT ATCGAGGCGC TCAATGGGAG TATTGCTGGG
TTGTCGTCTA GTGCTGATAA CCCTGCAGAA GTGGATATTG CTGGCAAAAT TGATGGCTAT
GCGCCTGTTG CATTAAATGG GGCGATTAAC CCTCTGCTTG AGGACATGTT TCTTGATTTG
AATTTTTCAG TCAGTGGCGC AGAGCTGACC TCGGTTAATC CCTATTCAGG CACATACATG
GGGCACTTTA TTGATAGAGG GTTGTTGTCT CTGGATGTGA AATATTCCCT GCAGGACAAT
CAGTTACGAG GTGACAACCA TGTGGTGATT GACCAGCTAA CCTTGGGGAG AAAAACAGAT
TCAGATCAGG CGCTTAGCCT ACCACTGGGG CTCGCTATTG CGTTGTTACA AGACTCAGAT
GGAGTGATTG ACTTAGGCAT GGAAGTGTCA GGTGATTTGA ATAACCCTAG CTTCGGTTTT
GGCTCTATCA TCTTAAAAGC GCTCGGCAAC TTAATTACCA AAGCCGTCAC CGCGCCTTTT
TCCTTATTGG CTAATTTAGT CGGCAGTGAC GACGAGTTGA ACGAAGTTGC GTTTTCCTCT
GGCTCTGCTG CGCTGAACGA GGATATATCT GAAAAATTGA ATACATTAGC TGAAGCTTTG
GCTAAGCGCC CAGGCCTGCG AGTTAACATT GAGGGGACAG TGAACGAGGT GCCAGATGCG
TTCGAATTGG CCGAACAAAA ATTGCAGCAA CAGTTACTTG ATGTGTCTGG GGAGGCTGCT
CTTCCTGTTG ATTTATCTTC AAGTACGCTA GTACTAGCCA GTCCGTTTGG AAGTGCATTA
ACCACTATGT TTACTAGCGC GACGAATAAA CAAGTGGATG AAGAAAGACT CACCGTAAAA
GCCCAATTGT TGCAAGACCA GCCTGATGCA GTTGATGGCC AAAGCACTAT CACTCAAGAG
CAGTTGGACC AAGCCCTAGT TATTGCCATG TACAATCAGG TGAGAAGCAG TATTGATATT
CCTCCGCATG CCCTGGGCAA ACTGGCCGAT ACGCGGGCTA AAGCGGTTAA AACCTTTTTA
GTTAACTCTG CCAATGTTGA TACCAATCGT CTATTTTTAC TCAATAGTCG CCAGCATTTA
CAGCGAGATG AGAGCGGTGT GACGCTCACT CTGGAAGCTA ACTAG
|
|---|
| Protein sequence | MSFKNLASTF SKQAKWVRIA TYLVIAYLLY ALILGVITPL VLQSQLPSVL SEKTGRDVNI
EKIRINPFLL RVRVTNIQIN EQASNEPFVR VALLELDAGF WQSLLHLTPA VEHVFIEKPY
AHVARTAGGD NTRFNFTGMI EALSQNGDKQ PQEDEATSEI PHIRLGLFRL SNGHVMLSDK
VTGTQINYPE LGFELTDLDT LASITVPATK RDALLPENHY AFTLLTDEGG AVHLDGQFQL
SPVDVKGKIE LESIALPPLW PLSNALMAAK LTSGLLDLNL NYAVTQGDSD MHLQVNRAQL
RVSDLTMSDA TSQPKINIAG IHINDFELDT ATQQIDINSI RIDEPWFEAS LDKNGVDLVA
LLTPKSETSS ASNAEFNTES IAEPKTKPQS EPEPEAKTAQ GTEPQNESRT ESQAASVSPK
PAEPAWRVIL QSFALNNGGV DVNESMVADD VHWRVFDINA STGVIDTRFE SPIDYTLQLG
VASDATKRPT SASGKFATNG KVMVAEQKLS GSVDFSQFAL SQLQPYISQY LNVNMQQGDA
GVSGTFAAGA NSPISFTGQA GVSALVVTDG PKQEPLLKWQ DMQVAGIQYD SQKRAFSLQK
IAFDKPFAKL VIDKDKNTNI SDLVVQQAAN DGITEHAPAT DDSSDTAHQS DQQTSLETAP
AMAINIGEIR LLGGSAYFED NSLRPRFASS IEALNGSIAG LSSSADNPAE VDIAGKIDGY
APVALNGAIN PLLEDMFLDL NFSVSGAELT SVNPYSGTYM GHFIDRGLLS LDVKYSLQDN
QLRGDNHVVI DQLTLGRKTD SDQALSLPLG LAIALLQDSD GVIDLGMEVS GDLNNPSFGF
GSIILKALGN LITKAVTAPF SLLANLVGSD DELNEVAFSS GSAALNEDIS EKLNTLAEAL
AKRPGLRVNI EGTVNEVPDA FELAEQKLQQ QLLDVSGEAA LPVDLSSSTL VLASPFGSAL
TTMFTSATNK QVDEERLTVK AQLLQDQPDA VDGQSTITQE QLDQALVIAM YNQVRSSIDI
PPHALGKLAD TRAKAVKTFL VNSANVDTNR LFLLNSRQHL QRDESGVTLT LEAN
|
|---|
| |