| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3543 |
|---|
| Symbol | |
|---|
| ID | 4175322 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4253284 |
|---|
| End bp | 4257780 |
|---|
| Gene Length | 4497 bp |
|---|
| Protein Length | 1498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638056572 |
|---|
| Product | Hpt sensor hybrid histidine kinase |
|---|
| Protein accession | YP_663099 |
|---|
| Protein GI | 109899844 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG0784] FOG: CheY-like receiver |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.476146 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTCATGA GTAAGGTATT TGGCGTTCTA TTTTTCTTCA CGTTCGCTAT GGGTATTCAC
GCTTCTGAAA GCCCTAATTT CAGTTTTACG TCCGCTGAAT TAAACAAAGA ATTATCGCAA
AAAACCGTAC GCCAGATTTA TCAGGACAGT ACCGGATACC TGTGGATCGT CACGCAAGAA
GGCCTCAGTC GGTACGATGG TTATCAGCTC CTTAGTTTTG TACACGATCC GCGGCAACCG
AACTCCCTCG GTTCAGATAA TGTACGCGCA ATATTAGAAG ATGAGCAAAA AAGACTATGG
ATTGCGACTG ATGGTGGGGG ACTGAATCTT TTTGATTCAG CCAAGCAGAC CTTCACCGTC
TGGCAAGATG CTAAAGACTC TGGCCAGTCA CCATTATCAA ACAGACAGCA ATCTCTTTAT
CACGACGCAG AAAATTACAT CTGGATAGGT TATCGCGACG GTAACTTTAG TCGGTTCAAT
CCCCAAGATA TGACATTTGA ACATTTTGAC ACCCGTGCTC TGTTGCCTGA GTTGGACAAA
GACGCCGCGG TCATGTCGCT AGTGGAAGAT GGCAACTGTA TTTGGTTGGC GACCGACGGC
AATGGCCTAC TCAAATTAGA TAAAAAAAAC AGAACGCTGA CGCGTATTCA TGCAGGCTCA
AACGAACCAC TGTTCAGTGA CAAATTAACG CAAGTTTTCA TTGATGTTCA GCAACGCTTG
TGGATAGCCA GTCACGATGC AGGGGTAAGT ATGTTGGACC CTCAGCGCAC TAGGTTTACC
ACTTGGCAAC ATGAAAACGA GCAGGCAGGT AGCCTTGCGG CAAATCTAGT ACATAGTATT
TATCAGGATC AACGTCAGCG AGTGTGGTTG GGTACTGAGT CCGGTGCAAG CTTGTGGAAC
GGGCGTAACA TGTTTACTAC CTACACCACA GAAAACGGAT TGAACGACAA TAAAGTGCTG
TCGATATTGC AAGATCCTTC TGGGTTAATG TGGTTTGGAA CATTCAACGG GATCACCAAA
AATATAGAAG TGCCCTTTGA GCATATTACT AAGGGCTTGG CCAATAATGT TGTACTGGGA
TTTGCGGAAA CGCAGTCATC AAAAGGGGAG CGTGCTATTT GGGTGGCGAC TTATGGTGGC
TTATCGCGAT TAAACGCCCA AGGCGAAGTG CAAGATGTTA TTAATAAAGA CAGCACCCCT
GCATTACGTG ATGCCAGAGT GATGACAGTG CGTGGTGATA ACAACATGCT GTGGTTTGGT
ACCCGAGGTG GTGGACTGGG GCGTCTCAAT GTCGATACTC AGCACATTGA TTATTATGTG
CATGATCCTC AAAATCCGAA AAGCCTGAGT TTTAATGGTG TCACCAGTGT CTTTCCTGAC
AGTGCCGGCA ATATTTGGGT CGGGACATTC GGCGGCGGGC TTAATTACTT GGCGGCAGGC
AGTGAAGAAT TTGTGCACTA TCGCTACGAC GAAAATGACC CACGCAGCCT CAATAGCGAT
CGTGTGCTCG CTATCTACCA ACTTCTTGAT GGAACCATAG TGGTCGGCAC GGTTGCGGGC
ATTAATATGC TTGATCCGGT ATCGCTGAAT TTTGATCATA TAGAGCATCA ACCGAACGAC
TTCGATAGTC TATCTGCACC TATGGCGTGG GCTTTTTACC AGGATTCAAA AGCACAACTT
TGGGTCGGTA CTCAAGGCGG CGGCTTAAAC AAGTGGTCTG CGAGTGATAT TGGACAATTA
CGAAATCACT TTACTCGTTT CGACGGTTTC AGTGGGCTAC CCAGTAGTCA TATTTACGCT
ATTTTGAATG ATAAAAATGA CAACTTATGG CTGAGCAGCA CGGCGGGTTT AACGCGGTTG
AATCCAGAAA GCGGCAAGGT TCGCCATTTC GACACCTCAC AAGGGCTCAA AAATAGCGAG
TTTAATTTCG GCGCGGGGTT CAAAGACAGT CAAGGCGTAA TGTATTTCGG TGGCAATGAA
GGCGTTGTGC GTTTTCACCC TGATGATATA AAAGACAACG ATGTCGTGCC GCCTGTGGTA
TTGGTGCGCA TTAAAAAGCT CAATGAGCAA GTGTGGTTCG ATGTCCCTTA CCAGCGTCTA
CAAAATCTGG AGTTGGATTA CACAGATTAT TTCATCTCGT TTGAATTTGC TGCTTTAGAT
TATAACGCGC CTGGCCTAAA CCAATATAGA TACAAACTAG AGGGACTTGA TCCTAGTTGG
ATTGAACTGG AGCACAGACG CTTGGCTACC TTTACTAATT TGCCCCCAGG TGAATACGTT
TTAAAAGTAC AGGCGAGCAA CAACCAAGGC TTGTGGAATA CCCAAGGGGT TGAATTGCCC
ATATCTGTGT TGCCTCCGCC ATGGAAAACC CTTTGGGCTT ACAGTTTATA TTGCTTGATA
GCGCTGCTAA TTATCCTCAA CGTTATATGG CGATATCGTA GAAAACGGCA AAAGGAACTG
CAACAACTCA TAGAGTTGGA AGAAAAAGTT GCCGAGCGTA CCAAGGAATT AAGTCATGCT
AATAGCCAGC TTGAGCAAGC AGTAGTAGAG ACCGAAAAAG CCCGTAGACT CGCTGAACAA
GCCAGTAAAG AGAAAAGTGA CTTTTTAGCT ATTATGAGCC ACGAAATTCG TACTCCAATG
AATGGCGTCT TAGGTATGAC CGAGGTCTTA TTAAGCTCAG ATCTGAAACC AAAACAGCAG
CACTTTGCCC AGCTGGTGTA CCGATCTGGC AGGCTATTGT TGGATTTACT TAATAACATT
TTGGACTTTT CAAAATTGGA GGCGGGTAAA GCGACGCTGG AGTCAGTGCC TGTTGACCTA
GAAGCACTGA TAGAGGAAGT GTGCGATCTA TTTAGTGAGG CTGCGTACAA CAAAGGTCTC
AACATTAACG CCATTTTATC CCCTGAGCCT TTGCCGCAGG TCTACGGCGA TCCTGCTCGC
CTGCGCCAGA TCATCGCCAA TCTAACCAGT AATGCGATCA AATTTACTGA GCGTGGAGAA
GTCAATGTCA GTATCAGGCG AGTCGCCTGT CATGATACTG AACATGAGGG TAACAACAAG
TACAGCGGAT TCGTATTTTG CGTACAGGAT ACCGGCATTG GTATGGCACC AGATCGCCAG
CAAAAGGTCT TCGAAATGTT CACGCAAGCA GATGCGTCAA CCACACGTAA ATACGGCGGG
ACAGGTCTAG GCTTGGCTAT CTGTAAGCAG CTTACTGTGC TTATGGGGGG GCAAATAGGC
GTGCAATCCA ACATTGGGGA GGGCAGTCGC TTCAGTGTTA AGATTGATTT ACCGCTTTCG
GACACCTCAT TGATCCAACC TGCGCCAATA TTAGCCTGTC CGACTGTGTA CTTAGTTAAT
TTAAACGGTG GGTTGGGGCA TGCGATAGAA ACCATGCTCA GTAAATTAGA TATCAACTTG
GTGCACGTGC AACGGGTTAA ATCTGAACTT GCCTCCGCCA AACAGGGCTT ATGGATCAGC
CAAGGTGAAT ACCAGTCGTC TATCCAAGAA GCGGGCATTC CTTTGGATAA TTGGATTTGT
CTGGTGCCGA CTTCCCAATG GCAGGAGAAC GACACGCGCA ATGTTTTGCC TCTTCCGGTG
CATTTTAGAG GCTTGTATAA GAGTTTAAAT AGAGCGCTGG GCATTGAAAA CATCCCGTCG
AGTCGAGCTG ATGACGAACA TCGCAATCAT CAGCATTTTT CTGCCAATAT TTTAGTGGCA
GAAGACAGTT TGACCAATCA AGAAGTCGCC AAAAGTATGC TCGGGCTATT GGGGTGTGAA
GCCTGGTTAG CTGACAATGG TGCCGAAGCA GTAGAGCAAG TGAACTTGCA ACAACCTGAT
TTGGTGTTGA TGGACTGTCA AATGCCCGTC ATGGATGGTT ACGCTGCGAC TAAAGCTATT
CGCCAGAATT GGCCGAATAT TCCTATTATA GCGCTGACCG CAGGCATGGG CGATAACCTG
AGGCAACAGT GCTTGGACTC CGGCATGAAC GATGTCATGT CTAAACCTTA TTCGTTGCAA
GAATTAGAGC AAACCTTATC GCGCTTCTTG GAAACGCCTG TTGCTAAAGA TGGGCTAATC
ACAGATGAAG AGCCACCTCA CGATGCACTT AAAGAGACTG ATGAGAGCCA AGAGCAACTC
GCGCTGTTAG ACATGTCGAC TGTGGATACG TTACTCAATA TTTCTCGAGA TACCGGTAAC
CCGGTGTTTG CGAAAGTACT TGATGCCTTT ACCCAAGAGG CGGAAAAACT GGTTGAGCAA
TTGGCCCAAC TTTCACAAAC AGCGCCGTTA GATCTAGCCG TTACCGAGGA AATCGCCCAT
GCACTTAAAT CGATGTCCGG TAACTCTGGC GCGAAGGCCT TATACGAATT GTGTAGGGAG
TTAGAGAGCA AAGTAAAGAA TAATGAAGTA CAGGAAGTGC TTTCGTTAGC TCAGCGTATT
CAAGCGACTT TTATCATCAG CTGCGAAAAA TTGGAGACGT TCAGACATGT CGATTGA
|
|---|
| Protein sequence | MVMSKVFGVL FFFTFAMGIH ASESPNFSFT SAELNKELSQ KTVRQIYQDS TGYLWIVTQE
GLSRYDGYQL LSFVHDPRQP NSLGSDNVRA ILEDEQKRLW IATDGGGLNL FDSAKQTFTV
WQDAKDSGQS PLSNRQQSLY HDAENYIWIG YRDGNFSRFN PQDMTFEHFD TRALLPELDK
DAAVMSLVED GNCIWLATDG NGLLKLDKKN RTLTRIHAGS NEPLFSDKLT QVFIDVQQRL
WIASHDAGVS MLDPQRTRFT TWQHENEQAG SLAANLVHSI YQDQRQRVWL GTESGASLWN
GRNMFTTYTT ENGLNDNKVL SILQDPSGLM WFGTFNGITK NIEVPFEHIT KGLANNVVLG
FAETQSSKGE RAIWVATYGG LSRLNAQGEV QDVINKDSTP ALRDARVMTV RGDNNMLWFG
TRGGGLGRLN VDTQHIDYYV HDPQNPKSLS FNGVTSVFPD SAGNIWVGTF GGGLNYLAAG
SEEFVHYRYD ENDPRSLNSD RVLAIYQLLD GTIVVGTVAG INMLDPVSLN FDHIEHQPND
FDSLSAPMAW AFYQDSKAQL WVGTQGGGLN KWSASDIGQL RNHFTRFDGF SGLPSSHIYA
ILNDKNDNLW LSSTAGLTRL NPESGKVRHF DTSQGLKNSE FNFGAGFKDS QGVMYFGGNE
GVVRFHPDDI KDNDVVPPVV LVRIKKLNEQ VWFDVPYQRL QNLELDYTDY FISFEFAALD
YNAPGLNQYR YKLEGLDPSW IELEHRRLAT FTNLPPGEYV LKVQASNNQG LWNTQGVELP
ISVLPPPWKT LWAYSLYCLI ALLIILNVIW RYRRKRQKEL QQLIELEEKV AERTKELSHA
NSQLEQAVVE TEKARRLAEQ ASKEKSDFLA IMSHEIRTPM NGVLGMTEVL LSSDLKPKQQ
HFAQLVYRSG RLLLDLLNNI LDFSKLEAGK ATLESVPVDL EALIEEVCDL FSEAAYNKGL
NINAILSPEP LPQVYGDPAR LRQIIANLTS NAIKFTERGE VNVSIRRVAC HDTEHEGNNK
YSGFVFCVQD TGIGMAPDRQ QKVFEMFTQA DASTTRKYGG TGLGLAICKQ LTVLMGGQIG
VQSNIGEGSR FSVKIDLPLS DTSLIQPAPI LACPTVYLVN LNGGLGHAIE TMLSKLDINL
VHVQRVKSEL ASAKQGLWIS QGEYQSSIQE AGIPLDNWIC LVPTSQWQEN DTRNVLPLPV
HFRGLYKSLN RALGIENIPS SRADDEHRNH QHFSANILVA EDSLTNQEVA KSMLGLLGCE
AWLADNGAEA VEQVNLQQPD LVLMDCQMPV MDGYAATKAI RQNWPNIPII ALTAGMGDNL
RQQCLDSGMN DVMSKPYSLQ ELEQTLSRFL ETPVAKDGLI TDEEPPHDAL KETDESQEQL
ALLDMSTVDT LLNISRDTGN PVFAKVLDAF TQEAEKLVEQ LAQLSQTAPL DLAVTEEIAH
ALKSMSGNSG AKALYELCRE LESKVKNNEV QEVLSLAQRI QATFIISCEK LETFRHVD
|
|---|
| |