| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3539 |
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| Symbol | |
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| ID | 4175318 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4245779 |
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| End bp | 4246438 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056568 |
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| Product | TonB family protein |
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| Protein accession | YP_663095 |
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| Protein GI | 109899840 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
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| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACACAA CCCTTGATTT AGTTTCACCT CAATTAACAC ATCCTTCCCT TCAAGTTATG
GCGCGTTTAG CGGGCAGCCT GCTAATAGCC TGCACCGTAA CTTTTGGGTT ATTTGTGGCG
ATGCAAAAAC TAATCGAAAA CAACGCAACC GGCGTGACGT CAGTGGAGGC TTTGCCGATA
ATTAATCTTT ATCAACAGTT TGAAGAAAAT CCAGTCATTG AAAAAGTAAG ACCTTTACCT
AAACCGAAGC CTGTTCCTAT TCCCACAGAG CAAATCAAGC CTCAAGAAGA AGCGCCTGAT
AAATCCGCGC TAATCTCTAA GTACGTGCCT GATATCACTA TTGCCGGGCC ATCAGGCCCA
ATTGGCACAC AAATAACGCT GGATGAAGGT GAAGCGCGTC CAGTGGTACG AATAGAGCCT
AAATATCCGC CTCAAGCCGC TCGCGATGGT ATTGAAGGGT GGGTAAAGTT GACGTTCTCT
ATCGGTACGC AAGGGCAAGT TATGGATGTG CAAGTGATTG ATGCCCAGCC CAAAAGAACA
TTTGATCGCG AAGCCAGAAG AGCATTGGGG AAATGGAAGT ACAAACCGCA AATCGTAGCG
GGCAAACCAC AGCAGCAAAA TGGCTTAACG GTGGTACTCG ATTTCAAACT ATCCCATTAG
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| Protein sequence | MHTTLDLVSP QLTHPSLQVM ARLAGSLLIA CTVTFGLFVA MQKLIENNAT GVTSVEALPI
INLYQQFEEN PVIEKVRPLP KPKPVPIPTE QIKPQEEAPD KSALISKYVP DITIAGPSGP
IGTQITLDEG EARPVVRIEP KYPPQAARDG IEGWVKLTFS IGTQGQVMDV QVIDAQPKRT
FDREARRALG KWKYKPQIVA GKPQQQNGLT VVLDFKLSH
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