| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3530 |
|---|
| Symbol | |
|---|
| ID | 4175309 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 4237096 |
|---|
| End bp | 4238052 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638056559 |
|---|
| Product | 2-keto-3-deoxy-galactonokinase |
|---|
| Protein accession | YP_663086 |
|---|
| Protein GI | 109899831 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3734] 2-keto-3-deoxy-galactonokinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACATGC AGTCTGATAT TATTATTTTG GGTGATTGGG GCACAAGCGT ATGCCGTCTC
TACTTGTGCC GCTTTCATCA ACAAGAGCTC ACCGTTTTGG CACGCACCAA AGGCATGGGC
ATCAAATATA TTAATAACCC TGAGTCTCGA TTTTTTGAGT TATGCCAACC TTGGATAGAA
TTATACGGAA ATGTGCCGGT ATTTTTAATT GGTGCCGTCG GCTCTGACAC CGGCTGGAAA
CAAACCAGCT ATGTGCCTTG TCCCACAGAT AAGAACAACT TATTGGCATT GAGTAAAAGT
TTTTCAGCTC GCGGCTTGAA CATCACCATT TTACCCGGTG TGTCTTGTCA GAACCGCCAT
CATCTGCCTG ATATTATGCG CGGTGAAGAA ACCCAAGTAT TCGGCTTTTT GTCTCAAGTG
CTTAACGCCT CCGATAAACG CTTAATTTGC TTGCCAGGCA CCCATACCAA ATGGGCATTA
TGTGAAGGTG AAAGCATTGC TTCTTTTGTG ACCAGTCCAG TGGGAGAACT CTATGAAGTG
CTGAGTCAAC ATAGTGTACT GCTTAGCCCT GCTTCTGTAC CCAGTTGGTG TAAAAGCAGT
TTTACCAATG GATTACGGGT AGGCATGCAT CAATCGAGTA ACTTGCTGCA TACCTTGTTT
GCTACCCGGG CGTATCAGAT CATCGACAAA CGCACCAACG CAGAAGCTGC TGGTTATTTG
TCAGGCTTAC TGATTGGGTC AGATGTAAAA GCGGCTATGC AAGATTTTGA TATTTTCTCG
CATGTGGCAG TCATTGGCTC GGACCATATC TGCGGTTTGT ATGTTGAGGC ACTAGAGTAT
ATGGGGATCA GCACTGAACA TTTTAGCAAC GAAGATGCGA CCTTATTAGG CCTACAAACC
CTAGCTTCAG TAAAATGGCG CGACCTCGCC GCTAATACAC CAAGCGAGCA ATCGTAA
|
|---|
| Protein sequence | MNMQSDIIIL GDWGTSVCRL YLCRFHQQEL TVLARTKGMG IKYINNPESR FFELCQPWIE
LYGNVPVFLI GAVGSDTGWK QTSYVPCPTD KNNLLALSKS FSARGLNITI LPGVSCQNRH
HLPDIMRGEE TQVFGFLSQV LNASDKRLIC LPGTHTKWAL CEGESIASFV TSPVGELYEV
LSQHSVLLSP ASVPSWCKSS FTNGLRVGMH QSSNLLHTLF ATRAYQIIDK RTNAEAAGYL
SGLLIGSDVK AAMQDFDIFS HVAVIGSDHI CGLYVEALEY MGISTEHFSN EDATLLGLQT
LASVKWRDLA ANTPSEQS
|
|---|
| |