Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3523 |
Symbol | |
ID | 4175302 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 4229399 |
End bp | 4230814 |
Gene Length | 1416 bp |
Protein Length | 471 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638056552 |
Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
Protein accession | YP_663079 |
Protein GI | 109899824 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCCCGG TTTCATTGGC GTGGATTGCG CAGCAAGTGC AGGGCGAAAT TATTCGCAGT GAAAACAGTA TTGCTGAAGA CGCCATAATT CAGGGTGTCA GCACTGACAC GCGTCATATA AATTCAGATG ATTTATTTAT TGCCTTGAGC GGACCAAATT TCGATGGCCA TAAATTTATC GAACAGGCTC AAACAAGTGG GGCAATAGCG GTAGTTGTTA GCCGTCAAGT GGAGACCCCG TTAGCCCAAA TATTAGTTAG TGATACCAAA GCCGCTCTGG GACTATTGGG ACAGGCAGTA AAGCGTGAGG TAGCACCAAA GACGGTGGCT ATAACCGGTA GCAGTGGCAA AACCACAGTC AAAGAAATGG TTGCTGCTAT TTTATCTCGG CGCGGTAAAG TGCTCGCCAC GAAGGGCAAT TTCAACAACG ATATTGGTGT GCCTCTTACC TTATTGCGTC TTGAAGCGCA GCACGAGTTC GCCGTGGTTG AGTTAGGTGC TAACCATCTT GGGGAAATTG CTTATACCAC TGAGTTGGTA AAGCCAGATG TGGCTACAAT CGTTAACGCT GCTGCTGCCC ACCTTGAAGG ATTCGGTAGC TTATTAGGTG TGGCACGCGC TAAAAGTGAA ATTTTCAAAG GGTTAGGAAA AGACGGGCTA GCTATTTTCA ACGCCGACAG CCAATTCTAC GCGTTCTGGC ACGGTAAGTA TGAACATCTA CGTAATCAGC GTTTTTCGAC CCAAGGTGAA GCCGACTATT ACGCACAGGA TGTCGTACTT GGTTTAAGTG GTTGCGCAGA CTTTCTGATG GTCACGCCCA TCGGTAAGGT GTCCATCACT TTGCCTTTGC CTGGTATTCA TAACGTCAGC AATGCCTTAG TTTCTGCTGC ATTGGCGATA GAAGTAGGTG CTAACTTACA AGATGTGCAA GCTGGGTTGC AGTACATGGC ACAAGTAAGT GGTCGCTTAC AAGTTAAGCA GCTAAGCGGT CAAGTTAAAG TACTTGATGA CACATACAAC GCTAACGTGG CCTCTGTAAA CGCAGCCATT GATTTACTTG GCAGCTTTGC TGGGCGCAAA ATTCTAGTGC TAGGCGATAT GGCTGAACTA GGAGAGCGAG CACGCTTTTA TCATCAGCAA GTAGGGGAAT ATGCCAAAGA AAAGGGCATA GACGACTTGT ACACTCTTGG CGTGCTCAGT CAAAGCGCCA GCGATGTGTA TCAAAAGAGC GGTTACCATT TTAGTGATAA AGACAAATTA GTCGCGGCAT TAGCCGAGCA TTTAGCAGCG GAGAAACGAG ATATCAGCAT TTTAGTAAAG GGCTCCCGTA GTGCGCGTAT GGAGTTGGTA GTGGAAGCTT TGGAGGCATC CCCCGTGGGA AAGTTTGAAC GCTTTAGGGA GCTAATGGCA TGTTGA
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Protein sequence | MIPVSLAWIA QQVQGEIIRS ENSIAEDAII QGVSTDTRHI NSDDLFIALS GPNFDGHKFI EQAQTSGAIA VVVSRQVETP LAQILVSDTK AALGLLGQAV KREVAPKTVA ITGSSGKTTV KEMVAAILSR RGKVLATKGN FNNDIGVPLT LLRLEAQHEF AVVELGANHL GEIAYTTELV KPDVATIVNA AAAHLEGFGS LLGVARAKSE IFKGLGKDGL AIFNADSQFY AFWHGKYEHL RNQRFSTQGE ADYYAQDVVL GLSGCADFLM VTPIGKVSIT LPLPGIHNVS NALVSAALAI EVGANLQDVQ AGLQYMAQVS GRLQVKQLSG QVKVLDDTYN ANVASVNAAI DLLGSFAGRK ILVLGDMAEL GERARFYHQQ VGEYAKEKGI DDLYTLGVLS QSASDVYQKS GYHFSDKDKL VAALAEHLAA EKRDISILVK GSRSARMELV VEALEASPVG KFERFRELMA C
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