| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3518 |
|---|
| Symbol | murC |
|---|
| ID | 4175297 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4222930 |
|---|
| End bp | 4224384 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638056547 |
|---|
| Product | UDP-N-acetylmuramate--L-alanine ligase |
|---|
| Protein accession | YP_663074 |
|---|
| Protein GI | 109899819 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0773] UDP-N-acetylmuramate-alanine ligase |
|---|
| TIGRFAM ID | [TIGR01082] UDP-N-acetylmuramate--alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCAC CCGATAAAGT TCATTACCAT GTGCCAGAGA TGCGCCGAAT TAAAAATATT
CACTTTGTGG GTATCGGCGG TGCTGGCATG GGTGGTATTG CTGAAGTGTT ATTAAACGAA
GGTTACCAGG TATCCGGCTC TGACCGTCAA GCCAATGGAA TGACAGATCG CTTGTCAGGC
CTTGGGGCAA CTATTTTCTT TGGACATCAA GCGAGTAATG TTGAGAAAGC CAATGTGGTA
GTGGTGTCCA GTGCGATTGA CCCAACTAAC CCAGAAGTAA ACGCCGCCAA CGAAATGCGT
ATTCCTGTTA TTCGCCGAGC AGAAATGCTA GCGGAATTAA TGCGTTTTAG ACATGGCATT
GCCATCGCGG GAACGCACGG CAAAACAACG ACGACTAGCT TGATAGCGAC TATTTTTGCT
CAAGCAGAGC TTGATCCTAC CTTTGTTATT GGTGGCTTAC TTAATAGTGC AGGCACGAAT
GCTAGATTGG GTTCGAGTCA GTACCTTATT GCAGAAGCAG ACGAAAGTGA TGCGTCCTTC
GTGCATCTTC AACCTATGGT GTCTGTGGTC ACGAATATTG AGCCTGATCA CATGGAAACT
TACCAAGGTG ACTTCCAAAA GATGCAAGAC ACCTACATTG ACTTTCTTCA CAACCTACCT
TTTTACGGTT TAGCCGTGTT GTGCATTGAT GATCCGGTGA TCACGCAATT ACTCCCTCGC
ATAAAACGTA AATACCTGAC CTATGGCTAC AGCGAAGTCG CGGATGTGCG TGCGACTCAT
GTTAAGCACA CATTTAATCA AAGTGAATTC ACTTTAAAGC GCAAAGATCA CCAAGACATA
CAAGTTGTGG TCAATGCGCC AGGGAAGCAC AACGTACTTA ACGCTCTTGC TGCTATTGCC
GTGGCAACGG ATGAAAATAT TGAAGATGCT GCAATCACAG CCGCGTTAGC GAATTTCTCT
GGCATTGGCC GTCGCTTTGA AATGTTGGGC GAATTTGCCA CAGGCGAGGG CGACGTGCTG
CTGGTTGATG ATTACGGTCA TCATCCCACT GAAGTTGAAG CGACCATAGC GGTAGCGCGT
AATAATTGGC CTGACAGACG ACTCGTTATG GCTTATCAGC CTCATCGCTA TTCACGAACC
CGTGATCTGT ACGAAGATTT TGTGCGCGTA TTATCACAAG TAGACGTGCT GTTGCTCCTT
GATGTGTATT CCGCTGGTGA AGAAAAAATA GAAGGGGCAG ACAGTAAATC CCTGTGCCGT
TCTATGCGTC AACGTGGTCA ACTTGAACCC ATTTATGTAG CAGACAAAAA CGAATTACCT
AAGTTATTGG CAGACAACCT AAAAGACCAA GATATTTTGT TGACCCAAGG TGCTGGCAAT
ATTGGCCAAA TTGCCAAAGA GCTACAAGAA ATGAAGTTAG ACAAGGGCGC GTTGCGTACC
GGGTGGTCAA AGTGA
|
|---|
| Protein sequence | MIAPDKVHYH VPEMRRIKNI HFVGIGGAGM GGIAEVLLNE GYQVSGSDRQ ANGMTDRLSG
LGATIFFGHQ ASNVEKANVV VVSSAIDPTN PEVNAANEMR IPVIRRAEML AELMRFRHGI
AIAGTHGKTT TTSLIATIFA QAELDPTFVI GGLLNSAGTN ARLGSSQYLI AEADESDASF
VHLQPMVSVV TNIEPDHMET YQGDFQKMQD TYIDFLHNLP FYGLAVLCID DPVITQLLPR
IKRKYLTYGY SEVADVRATH VKHTFNQSEF TLKRKDHQDI QVVVNAPGKH NVLNALAAIA
VATDENIEDA AITAALANFS GIGRRFEMLG EFATGEGDVL LVDDYGHHPT EVEATIAVAR
NNWPDRRLVM AYQPHRYSRT RDLYEDFVRV LSQVDVLLLL DVYSAGEEKI EGADSKSLCR
SMRQRGQLEP IYVADKNELP KLLADNLKDQ DILLTQGAGN IGQIAKELQE MKLDKGALRT
GWSK
|
|---|
| |