| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3517 |
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| Symbol | ddl |
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| ID | 4175296 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4221977 |
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| End bp | 4222933 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638056546 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | YP_663073 |
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| Protein GI | 109899818 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGACTCTGG CGAACGCAAC ACACACTAGT GCAATAGATA TTGCACGCTT TGGAAAGGTC
GCCGTGATGT TTGGCGGGCG CTCTGCCGAG CGTGAAGTAT CCCTGCGCTC AGGGCAAGCT
GTGCTTAGCG CATTGATCAG CGCTGGTGTA AACGCCCATG GCTTTGATCC TGCTGAGTCT
GAGCTACATC AACTTGTGGA ACAGAAATTT GATCGCGTGT TGATCATGCT TCATGGCCGT
GGCGGTGAAG ACGGCTCGCT ACAAGGCGCA TTACAGCAAA TGAACATGCC TTATACCGGT
ACGGGCGTCT TAGGTTCTGC CTTATGCATG GATAAAATAC GCAGTAAACA GGTGTGGCAG
AGTCTGGGAC TCCCAACAGC CAATTACGAA ATTGCGGATA AAAGAGACTT TAATGCCGCG
AACTGCAGCG ATATAATGTC CCGCTTAGGA GATCTGGTTA TGGTCAAGCC TGCTCAAGAA
GGTTCGAGTA TCGGCATGGC CAAAGTGTCA AATGCGCAAC AACTCGCCGC AGCGATCCAA
CAGGCTTTTG AATATGACGA TAAAGTGTTG TTGGAGCAAT TCATCCAAGG TTCAGAGTAC
ACCGTTAGCC TATTAAATGG TGAAGCGATG CCCTCGATCA GTATGTCGAC CCCACGAGAC
TTTTATGACT ATGAGGCTAA GTACCAGTCT AATACGACTG AGTATTTTTG CCCTAGCGGT
TTGCCTGCGG AACAAGAAGG GCTGTTAGCG CGTCTTGCGT TGGACGCATT CGATGCCGTC
GCAGGCTCAG GTTGGGGAAG AGTAGATTTT ATGCAGGATA TGTTGGGGCA GTTTTATTTA
CTAGAAGCGA ACACAGTACC GGGTATGACG GAAAAGAGTT TAGTGCCTTT AGCGGCCAAG
CAAGCAGGGT TGAGCTTTGA GCAACTTTCC TTAGCTGTGT TGGCAACGGC AGGTTAA
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| Protein sequence | MTLANATHTS AIDIARFGKV AVMFGGRSAE REVSLRSGQA VLSALISAGV NAHGFDPAES
ELHQLVEQKF DRVLIMLHGR GGEDGSLQGA LQQMNMPYTG TGVLGSALCM DKIRSKQVWQ
SLGLPTANYE IADKRDFNAA NCSDIMSRLG DLVMVKPAQE GSSIGMAKVS NAQQLAAAIQ
QAFEYDDKVL LEQFIQGSEY TVSLLNGEAM PSISMSTPRD FYDYEAKYQS NTTEYFCPSG
LPAEQEGLLA RLALDAFDAV AGSGWGRVDF MQDMLGQFYL LEANTVPGMT EKSLVPLAAK
QAGLSFEQLS LAVLATAG
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