| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3489 |
|---|
| Symbol | |
|---|
| ID | 4175268 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 4188439 |
|---|
| End bp | 4190199 |
|---|
| Gene Length | 1761 bp |
|---|
| Protein Length | 586 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638056518 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_663045 |
|---|
| Protein GI | 109899790 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4805] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAAA CCACAATAAA AACCTCACGC AGACTGCGCA CTACCCTTGG CACGCTAAGC
CTTTTAGCGA TTTCAGCAAG CGCTTGGGCC GATGCTACTC AAGACTTTAA GCATTTACTG
CAAACCCACT GGCAAGAAGC ACAAAAAGAG AAAATATTCT TTCGCACTGA CCCAGATGCA
TGGAAGCCCC AAGGAAAATT AGCAGATTTT AGCCCACAAG GGTTTGAGCG CCGAGAAGAC
TTCAATCAGA AAATGCTTGA ACAGTTGGCT AAAATTGATG TGGCGCAGCT CAGCCCGGGC
GAGCAAGTTA GCTACCGCTT ATTCCAGTAC GAGCGTGAAA CCGAAGCCAA AAGCTATCAA
TTTCAAGATC GCTATTTCCC CATTAACTTT TTAAGTGGCT GGCACACCTA TTTTGCCCAG
GCCCCTGCCA ATATGGCATT TTTAACGGCA CAAGATTACG ACCAATACTT AGTTAGCCTT
GAAGATTATC CACGCTTTAA CCAAGAAAAT ATCGATTTGC TTGCACAAGG CGTTGAAAAG
GGCTTTGTAC AACACTGTGA AACCTTCAAA AATTACCAGC AGTCTATTAC TGATCATATT
GTTGAAAATC CACAAGACAG CGCACTGTAC GACCCGTTCA CGCGTTTCCC TAGTCAGTTT
AGCGAAAAGC AAAAAACACA ATATGCCGCC AAAGGTGCCG CTCTTATCAA AGATTCAGTT
GTACCTGCCT ATGCGCATTT CAACGATTAC TTTGTGAATC ACTACATGAC TCACTGTCGC
CAAGAGCCGG GTATTTCTAG TGTCAAAGGA GGGGCTGAAT ACTATGCTTA TACTGCGAAT
TATTACACCA CCACAGACTT AACGCCCAAG CAAATCCACC AGCTCGGTTT GGACGAAGTT
GCTCGCATCA GTAAGGAAAT GGAAGCTATT ATTCAACAAG TGGGCTTTGA AGGAAGTTAC
GCGGAGTTTC TCCAGTTTTT AGCTACCGAT CCGCAATTTT ATGCTCAAGA CCGTCAAGAC
GTGATGGAAA AAACCGCTTT TATCACGCAA AAAATGTACG GCAAATTACC CAGTTTTTTC
GCTACCTTGC CACGTAACAC CTTCACCATT AAAGGCTCAG CGACACGCGG CGCGTTTTAC
ATGCCACCGC CAGATAATCG CACACCCGGA ACTTACTTTT TAACGTCTGA TCCCGCCCAG
CAACCACTGT ACAACTTAGA AGCACTGAGC TTACATGAAG CAGTACCTGG TCATCATTTG
CAAAATGCGA TTGCTATGGA ATTAGAGGTG CCTGAGTTTC GCCGCACACT TAATCATTCG
GCTTTCTCTG AAGGTTGGGG CTTGTACTCT GAGCGTTTAG GCAAAGAAGC TGGTTTTTAC
CAAGACCCTT ATTCAGATTT TGGCCGCTTA GGCTACGAAA TGTGGCGCGC AGTGCGACTC
GTGGTGGATA CAGGCATTCA CGCCTTTGGC TGGAGCCGCC AGCAAGCCAT TGATTATTTG
GGCTCGCGCA CAGCTTTGAC CGAAAAAGCC ACTGCGGATC AAATCGATCG TTATATCTCT
TGGCCTGGTC AAGCGCTGTC TTACAAAATT GGCGAGCTTA AAATCCGCGA ATTACGCAGC
AAAGCAGAGG CCAGCTTGAA AGAAAAATTC GACATCCGCC AATTCCATGA CGTGATTATC
GGCCAAGGCT CGTTGCCCAT GGCCGTACTT GAAGATAGCG TGAACCAATG GATTGAAACG
CAGCTAAAAC GCGATGAGTA A
|
|---|
| Protein sequence | MNQTTIKTSR RLRTTLGTLS LLAISASAWA DATQDFKHLL QTHWQEAQKE KIFFRTDPDA
WKPQGKLADF SPQGFERRED FNQKMLEQLA KIDVAQLSPG EQVSYRLFQY ERETEAKSYQ
FQDRYFPINF LSGWHTYFAQ APANMAFLTA QDYDQYLVSL EDYPRFNQEN IDLLAQGVEK
GFVQHCETFK NYQQSITDHI VENPQDSALY DPFTRFPSQF SEKQKTQYAA KGAALIKDSV
VPAYAHFNDY FVNHYMTHCR QEPGISSVKG GAEYYAYTAN YYTTTDLTPK QIHQLGLDEV
ARISKEMEAI IQQVGFEGSY AEFLQFLATD PQFYAQDRQD VMEKTAFITQ KMYGKLPSFF
ATLPRNTFTI KGSATRGAFY MPPPDNRTPG TYFLTSDPAQ QPLYNLEALS LHEAVPGHHL
QNAIAMELEV PEFRRTLNHS AFSEGWGLYS ERLGKEAGFY QDPYSDFGRL GYEMWRAVRL
VVDTGIHAFG WSRQQAIDYL GSRTALTEKA TADQIDRYIS WPGQALSYKI GELKIRELRS
KAEASLKEKF DIRQFHDVII GQGSLPMAVL EDSVNQWIET QLKRDE
|
|---|
| |