Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3489 |
Symbol | |
ID | 4175268 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 4188439 |
End bp | 4190199 |
Gene Length | 1761 bp |
Protein Length | 586 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638056518 |
Product | hypothetical protein |
Protein accession | YP_663045 |
Protein GI | 109899790 |
COG category | [S] Function unknown |
COG ID | [COG4805] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAACCAAA CCACAATAAA AACCTCACGC AGACTGCGCA CTACCCTTGG CACGCTAAGC CTTTTAGCGA TTTCAGCAAG CGCTTGGGCC GATGCTACTC AAGACTTTAA GCATTTACTG CAAACCCACT GGCAAGAAGC ACAAAAAGAG AAAATATTCT TTCGCACTGA CCCAGATGCA TGGAAGCCCC AAGGAAAATT AGCAGATTTT AGCCCACAAG GGTTTGAGCG CCGAGAAGAC TTCAATCAGA AAATGCTTGA ACAGTTGGCT AAAATTGATG TGGCGCAGCT CAGCCCGGGC GAGCAAGTTA GCTACCGCTT ATTCCAGTAC GAGCGTGAAA CCGAAGCCAA AAGCTATCAA TTTCAAGATC GCTATTTCCC CATTAACTTT TTAAGTGGCT GGCACACCTA TTTTGCCCAG GCCCCTGCCA ATATGGCATT TTTAACGGCA CAAGATTACG ACCAATACTT AGTTAGCCTT GAAGATTATC CACGCTTTAA CCAAGAAAAT ATCGATTTGC TTGCACAAGG CGTTGAAAAG GGCTTTGTAC AACACTGTGA AACCTTCAAA AATTACCAGC AGTCTATTAC TGATCATATT GTTGAAAATC CACAAGACAG CGCACTGTAC GACCCGTTCA CGCGTTTCCC TAGTCAGTTT AGCGAAAAGC AAAAAACACA ATATGCCGCC AAAGGTGCCG CTCTTATCAA AGATTCAGTT GTACCTGCCT ATGCGCATTT CAACGATTAC TTTGTGAATC ACTACATGAC TCACTGTCGC CAAGAGCCGG GTATTTCTAG TGTCAAAGGA GGGGCTGAAT ACTATGCTTA TACTGCGAAT TATTACACCA CCACAGACTT AACGCCCAAG CAAATCCACC AGCTCGGTTT GGACGAAGTT GCTCGCATCA GTAAGGAAAT GGAAGCTATT ATTCAACAAG TGGGCTTTGA AGGAAGTTAC GCGGAGTTTC TCCAGTTTTT AGCTACCGAT CCGCAATTTT ATGCTCAAGA CCGTCAAGAC GTGATGGAAA AAACCGCTTT TATCACGCAA AAAATGTACG GCAAATTACC CAGTTTTTTC GCTACCTTGC CACGTAACAC CTTCACCATT AAAGGCTCAG CGACACGCGG CGCGTTTTAC ATGCCACCGC CAGATAATCG CACACCCGGA ACTTACTTTT TAACGTCTGA TCCCGCCCAG CAACCACTGT ACAACTTAGA AGCACTGAGC TTACATGAAG CAGTACCTGG TCATCATTTG CAAAATGCGA TTGCTATGGA ATTAGAGGTG CCTGAGTTTC GCCGCACACT TAATCATTCG GCTTTCTCTG AAGGTTGGGG CTTGTACTCT GAGCGTTTAG GCAAAGAAGC TGGTTTTTAC CAAGACCCTT ATTCAGATTT TGGCCGCTTA GGCTACGAAA TGTGGCGCGC AGTGCGACTC GTGGTGGATA CAGGCATTCA CGCCTTTGGC TGGAGCCGCC AGCAAGCCAT TGATTATTTG GGCTCGCGCA CAGCTTTGAC CGAAAAAGCC ACTGCGGATC AAATCGATCG TTATATCTCT TGGCCTGGTC AAGCGCTGTC TTACAAAATT GGCGAGCTTA AAATCCGCGA ATTACGCAGC AAAGCAGAGG CCAGCTTGAA AGAAAAATTC GACATCCGCC AATTCCATGA CGTGATTATC GGCCAAGGCT CGTTGCCCAT GGCCGTACTT GAAGATAGCG TGAACCAATG GATTGAAACG CAGCTAAAAC GCGATGAGTA A
|
Protein sequence | MNQTTIKTSR RLRTTLGTLS LLAISASAWA DATQDFKHLL QTHWQEAQKE KIFFRTDPDA WKPQGKLADF SPQGFERRED FNQKMLEQLA KIDVAQLSPG EQVSYRLFQY ERETEAKSYQ FQDRYFPINF LSGWHTYFAQ APANMAFLTA QDYDQYLVSL EDYPRFNQEN IDLLAQGVEK GFVQHCETFK NYQQSITDHI VENPQDSALY DPFTRFPSQF SEKQKTQYAA KGAALIKDSV VPAYAHFNDY FVNHYMTHCR QEPGISSVKG GAEYYAYTAN YYTTTDLTPK QIHQLGLDEV ARISKEMEAI IQQVGFEGSY AEFLQFLATD PQFYAQDRQD VMEKTAFITQ KMYGKLPSFF ATLPRNTFTI KGSATRGAFY MPPPDNRTPG TYFLTSDPAQ QPLYNLEALS LHEAVPGHHL QNAIAMELEV PEFRRTLNHS AFSEGWGLYS ERLGKEAGFY QDPYSDFGRL GYEMWRAVRL VVDTGIHAFG WSRQQAIDYL GSRTALTEKA TADQIDRYIS WPGQALSYKI GELKIRELRS KAEASLKEKF DIRQFHDVII GQGSLPMAVL EDSVNQWIET QLKRDE
|
| |