| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3437 |
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| Symbol | |
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| ID | 4175214 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4122052 |
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| End bp | 4124106 |
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| Gene Length | 2055 bp |
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| Protein Length | 684 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638056468 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_662997 |
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| Protein GI | 109899742 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAGTCC ATCAAGAAGC CATAAAAGAC GCTGTGTATC AGTTGTTTGA CGAGGTAGAT
GCTCTTTCTG TCCAAGGATA CGATGAAGAG CGGAATGTGA TTTACTGGAA TTTGGGCAGC
GAGTTACTTT ATGGCTTTAG CGAAGAAGAA GCGTTAGGTA AGAAACTCGA AGATCTGATT
TTCCCCGACT TTATGCGTGA ACCCGTTATT GCCGCCCACA CTGATTGGAT CAATAAAGGC
ATTAAAATTC CTGCTGAAGA ACTGACATTG CGCCATAAAA ATGGTGGCGA TGTTAACGTA
TTTTCGAGCC ATGTTTTGTT CACAAATGAA CACAATAAGC ACGAAATGTA CTGCATTGAT
ATCGATCTCG CCGACGTACG ACAAGCCCAA GCGCAAGCAA AATTTAAAGA CAACATGCTT
GAAGCGGTCT TTGAGGCCAC CCCAGATTTG TTCTTCTTGA TGGAAGAAGA CGGCACCATC
ATTGATTCTC ATGGGGGGGA TGACAAATAT CTCGGTGCAT CACCAAGTGA ATGCGTCGGA
CGCACCATTA CAGATTTGTT TCCACGCAAG GTGGCACGCA AGTATACGCT ATTTAATAAA
AGGGTGATTG AGCAAGAGGG TATTTCTACC TTTGAATATG AACTCACTTT GCCAGACGGT
ATTCGCTACT TCGAAGCAAG ACTGAGCCAT GTTAAGGCGT ACAACCAAAT AGTAGTGATC
GTTCGCGATA TCACTGAGCA GCATAAGGCG GCTCAAACGA TACGCCATCA CGCTTATTAC
GATAGTTTGA CCTTGCTGCC GAATCGCTTC TTGTCTCTGG ATCGTTTATC GCAAATGCTT
AAAGAGGCGC AAAGAAACGA AGAAAAAGCC GCTCTGCTAT TTCTAGATCT AGACGACTTT
AAGAAAGTGA ATGACTCATT AGGCCACGAA GTAGGCGACA AACTCCTAGT TGAGGCGGCT
AACAAGCTAA CCTTAGCCTT GCGAAAGGCG GACACGGTAG GGCGCTTAGG GGGAGACGAG
TTTATCGTGT TGTTACGGGC ACTTGCTGAT GATAACGATG CAAAGGAGGT GGCCGAAAAC
CTACTTCGGG TATTCAGAGA CCCGTTTCTA ATTGATGGTA AGGAGCTGAT CCTAACCTTG
AGTATTGGCA TTGTAACGTA TCCTGAAAAC GGCAGCAGTG CCTCTGATTT ATTGCGCCAT
GCTGATGCTG CCATGTACCA ATCTAAATTA TCAGGGCGAA ATACGTATTC ATTTTTCACA
AAAGAAATGA ATGCCATTAT GTTGCGCCGT TTCGAAATCG AAGGGCAGCT CAATCAAGCG
CTTCAGCGTA AAGAATTTGA GGTGTTTTAC CAACCCAAAT TTAGTGTGCA AAATAGAAAC
GTAATCGGTG CTGAAGCATT AATTCGTTGG CGTAATCCGA TATTGGGTAA TGTGCCTCCT
GACGAATTTA TCCCCATTGC TGAACATACC GGGTTAATTG TGCCCATTGG TAAATATGTT
ATTGAACAAG CTCTAGAGTT TTTGCGGGAG TGGGCGAGTA TTCATAATAA AAACTATACC
ATTGCGGTCA ATTTATCGCC GCGGCAATTT AGGGACAAAG AGCTAATTAA CTTTATTTTA
TCGGCATTGA GCAAAGAGGA AATCTCGCCG CAAAATTTGG AGTTTGAAAT AACGGAGGGG
GTATTAATGG TTGGTAATGC CTATGTGGAA GAGGCGCTGG AAGAGCTTCA CCAGTTAGGT
GTGAAATTAT CGATGGACGA TTTTGGTACA GGGTACTCTT CACTGAGTTA TTTGCGTCGC
TATTCATTTG ATATTTTAAA GATAGACCGC AGCTTTATTG ATGGCATCAC TGTGAATAAG
GAGGACTTTG ATTTAGTCAA AGCAACCATC GCAATGGCGC ATAGTTTAGA CCTAGAGGTC
GTCGCTGAAG GAGTTGAAAC TCATGAGCAA CTTATGTTGC TAGATAAACT CGGCTGCGAC
TTAGTTCAAG GCTACTATTT TAGTAAACCG GTACCAGCTC AAGCCTTAAT CGATTATAGA
TATCCGGCAA GCTAA
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| Protein sequence | MIVHQEAIKD AVYQLFDEVD ALSVQGYDEE RNVIYWNLGS ELLYGFSEEE ALGKKLEDLI
FPDFMREPVI AAHTDWINKG IKIPAEELTL RHKNGGDVNV FSSHVLFTNE HNKHEMYCID
IDLADVRQAQ AQAKFKDNML EAVFEATPDL FFLMEEDGTI IDSHGGDDKY LGASPSECVG
RTITDLFPRK VARKYTLFNK RVIEQEGIST FEYELTLPDG IRYFEARLSH VKAYNQIVVI
VRDITEQHKA AQTIRHHAYY DSLTLLPNRF LSLDRLSQML KEAQRNEEKA ALLFLDLDDF
KKVNDSLGHE VGDKLLVEAA NKLTLALRKA DTVGRLGGDE FIVLLRALAD DNDAKEVAEN
LLRVFRDPFL IDGKELILTL SIGIVTYPEN GSSASDLLRH ADAAMYQSKL SGRNTYSFFT
KEMNAIMLRR FEIEGQLNQA LQRKEFEVFY QPKFSVQNRN VIGAEALIRW RNPILGNVPP
DEFIPIAEHT GLIVPIGKYV IEQALEFLRE WASIHNKNYT IAVNLSPRQF RDKELINFIL
SALSKEEISP QNLEFEITEG VLMVGNAYVE EALEELHQLG VKLSMDDFGT GYSSLSYLRR
YSFDILKIDR SFIDGITVNK EDFDLVKATI AMAHSLDLEV VAEGVETHEQ LMLLDKLGCD
LVQGYYFSKP VPAQALIDYR YPAS
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