| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3430 |
|---|
| Symbol | |
|---|
| ID | 4175207 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 4111791 |
|---|
| End bp | 4112336 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638056461 |
|---|
| Product | PfpI family intracellular peptidase |
|---|
| Protein accession | YP_662990 |
|---|
| Protein GI | 109899735 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0693] Putative intracellular protease/amidase |
|---|
| TIGRFAM ID | [TIGR01382] intracellular protease, PfpI family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTACGT CACTAGCACA TAAGCGTGTT GCCATTTTGG CCACTGATGG TTTTGAGCAA
AGCGAGTTAT TTCACCCATT GAATGCGTTA AAAGAAGCCA GCGTAAAAGT GGATATCATT
TCTCTTGAGA AAGGGTCAAT TAAAGGTTGG GATGAAGATA ATTGGGGGGA GTCGATTAAG
GTCGATTTAA CACTTCAAGA AGCGAAAAGC GAAAACTATG ACGCTCTGGT GCTACCTGGC
GGATTATTCA ACCCCGACAC CTTACGTACC AGCAATGCTG CCATCGCGTT CATTAAAGAT
TTCTTTGCCG ATGAAAAACA ACGCCCCGTC GCAGCGGTTT GTCATGGCCC TTGGCTACTC
ATTGAAGCAG GTATCGTAAA AGGGCGTAAC TTAACCTCTT ATCCGAGCAT TCAAACTGAT
TTACGTAACG CAGGGGCAAA TTGGCAAGAT GCACAGGTGC TGATCGATGG CCAAATCATC
ACGAGTCGTA ACCCAGATGA CTTGCCCGCG TTTAGTGAGC AAATCATCAA AGCGTTGAGA
AACTAA
|
|---|
| Protein sequence | MTTSLAHKRV AILATDGFEQ SELFHPLNAL KEASVKVDII SLEKGSIKGW DEDNWGESIK
VDLTLQEAKS ENYDALVLPG GLFNPDTLRT SNAAIAFIKD FFADEKQRPV AAVCHGPWLL
IEAGIVKGRN LTSYPSIQTD LRNAGANWQD AQVLIDGQII TSRNPDDLPA FSEQIIKALR
N
|
|---|
| |