| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3416 |
|---|
| Symbol | |
|---|
| ID | 4175193 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4092224 |
|---|
| End bp | 4092976 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638056447 |
|---|
| Product | nucleotidyl transferase |
|---|
| Protein accession | YP_662976 |
|---|
| Protein GI | 109899721 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.307515 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAA GAATAAATAC TGCGATGATT TTGGCGGCTG GGCGGGGTGA GCGCATGCGT
CCATTAACAG ATACCCTCCC AAAACCCTTG TTAGAAGTGC GCGGTAAGCC TTTGATTGAA
TACCACCTTG AACACCTAGC CACAGCGGGT ATCAAGCGCG TTGTGATCAA TCACGCTTGG
TTGGGCGATA AAATAGTACA ACGGCTCGGT GATGGTTCGC GCTTTAATCT AGAAATAATG
TATTCGAAGG AAGAAACGGC ACTTGAAACA GCAGGTGGCA TAAAGCAAGC ATTGCCACTG
CTTAGTCAAG ATAACCCGTC AGGTGCATTT TTAGTGGTCA ATGGTGACGT TTTCACTGAC
TTTTCTTTTG TGAACATGCT TGATGAATTG TCGGCAAAAT CTGCTCTGCT TGCTAATGAG
TTCCCCTTGG CCCACTTGAT ATTAGTGCCA AACCCCCCAC ACAATCCTGA TGGCGATTTT
TACCTACGGG GTGGTCGTGT GAGCAAAGTG CTACAGCAAG TCCCCCAGAA TGAAACACCA
ACCTGCGACG GCCAGTGGGG TAAATACACT TTTAGCGGTA TCGGAGTATA CCGCAAGGCG
TTGTTCGACA GCCTCACTCC AACGAGTTTG CGGTTAGCGC CGGTATTGGT CGATGCGATG
GCCAATGAGT TAGTCAGTGG GTCCCTATTT GAAGGCCTGT GGATTGATAT AGGCACGCCT
GAGCGTTTGG CTCAATTAAA TACACAAGAT TGA
|
|---|
| Protein sequence | MNKRINTAMI LAAGRGERMR PLTDTLPKPL LEVRGKPLIE YHLEHLATAG IKRVVINHAW
LGDKIVQRLG DGSRFNLEIM YSKEETALET AGGIKQALPL LSQDNPSGAF LVVNGDVFTD
FSFVNMLDEL SAKSALLANE FPLAHLILVP NPPHNPDGDF YLRGGRVSKV LQQVPQNETP
TCDGQWGKYT FSGIGVYRKA LFDSLTPTSL RLAPVLVDAM ANELVSGSLF EGLWIDIGTP
ERLAQLNTQD
|
|---|
| |