| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3414 |
|---|
| Symbol | |
|---|
| ID | 4175191 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4089018 |
|---|
| End bp | 4091081 |
|---|
| Gene Length | 2064 bp |
|---|
| Protein Length | 687 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638056445 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_662974 |
|---|
| Protein GI | 109899719 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAAAAAC GAGTATTCAT AGGTGCAATA TGCTCATTAG CCAGCGTGGG TGCACTAACC
AGCACATTGG CATATGCAGA TACTGATACA ACAGAAACCG AAAGTACATC GGCCGTAGAG
AAAATATCAG TTGTAGGGGC CGCCACCAAT CTCAGCATTA CCGCCGAAGA TATAGAGCAA
TATCAAGCGA GTGATCTGGC GGATATCTTC CGTTATTCAC CTTCTGTCAG TGTGGGTGGC
TCAGTGGGCG TAGCGCAAAA GATTTATATT CGCGGCTTAG AAGATGCGTT TTTGAATGTT
ACGGTCGATG GGGCGCAGCA AACCTCTACC TTGTTTCACC ATATTGGTCG GGTGACGATT
GACCCAGACC TTTTACAACA AATTGATGTG CAGGCGGGGG CAGGGGAGGC CACCAGTGGT
CCTGGTGCTA TTGGAGGCTC AATTCGCTTT AAAACCAAAG ATGCGCAAGA CATGTTAAAG
CCAGAAGAGC AATTTGGAGG CCGCGTTAAG GCAAACTACT TTTCAAATGA CGGTACTCGC
TACAGTGGCA GTCTTTACGG CAAATTAAGC GATTCTTGGG GGGTATTGGG TTATTACAGC
ACCATTGACC GAGACAACAT GGAAGATGGT AACGGCAATG AGATATACGG TACCGCCGCA
GATCAAGACA TGGCGTTTTT GAAAGTTAGT GGTGATATCG CAGAAAATCA ATTCTTGTCG
TTAAGCGTTG AACAACGTGA TGAAGAAGGC GAGTTTTCAG CGCGGCCTAA TTGGGCTGTG
CAAGAAGGTG ATGCCCTTTA TTCAAGTGAA GCTCAGCGTG ACACCTACGT GGCTAACTAC
CGTTTTGCAC ACAGTGCGTT GGTTCACATC GAAGCAACCG CATACCAAAC AGACTCTTCT
TTTCGCGGTG GCCGCTTTGA TTGGTTAGCA GAAATTGACA CCTATGGTTT CGATCTGCGC
AATACCAGTG AAACTGGGCA GCATAAATTT GTTTACGGTC TTGATTATCG TCACGATGAA
GTGACCAGTG GATCTGCCCA AGGCGCGACT GAAAACGCCG AAGAAGGGAG TGTGCTTGGG
ATCTACGCTC AAGGTTACAC TGATCTCACC CCAGAGTTAT TGCTAAGTTA CGGTGTTCGT
TACGACGACT ATGATTTTGA GCAAAACATC TTGATTGATG AATACTATGG TGAACCCGTC
ACCGACGTTG CATCGACATT GGATGACTCT GAAGTCAGTT TTAATGTGGG GCTCGCCTAT
GACTTAACCC AAGAGTGGAC TGTCGGGTTA GGCTACGCTC AAGCCGCTAG AGGCAAGCAG
ATAGGTGATG GCTTTACCAT CGACGGCTAT CTCTATGATG GCTCAGATAT ACCGGTTGTT
GCCAATGACC TAGTACCTGA AACCGTAGAA AATATCGAAG CGTCTGTTGA ATACAATACT
CATAATCTGA ACGCTAAGCT TAGTGTTTAT CGCTCTTCTT TGGATGACGT TATTTTTGAA
GGATATGAAG GTAATGCTGT GTTTAACAAT ATCGGCACAC TCGATACAAG TGGTGTTGAG
TTTGATGTGG CATATCGTGT AAACGGAATC GATTTATTCC TTGGATTCTC CAGTGCAGAT
ACTGAATTAA AGCCAAGAGA CGACTTATAC AGCGTCAGCT ACTCATCAAT TGATATTAAC
GGCTATGAAT TTGTCGGCTT AGGAAACAGC CGAGGAAATA CTTGGGTGGC GGGAGCGGAC
TACGACATCA ACCCAGATAT TAGCATTGGT GTGAGTGTAG CTAAAGTGGA CTCTATTGAT
ATTGACACCC TGCATCAAGC TGTAGATTTA GGTTGGACAG ATGCCTTATA TCGCTTAAAT
AAACCCAGTT ACACTACAGT GGATATTTAC GGAAAATGGC ATATCACCAA TAACTTGATG
GTTAATTTAG CGGTCAGCAA CTTATTCGAT AAGTTATATA TCGACCACTC AAGTGTGGGG
GACTATAGCG AGGTATTTGC TACGGTTATT GGCCCATATG AAGCAGGTCG TGACGTTCGC
TTGTCTGTCT CTTACGATTT TTAA
|
|---|
| Protein sequence | MKKRVFIGAI CSLASVGALT STLAYADTDT TETESTSAVE KISVVGAATN LSITAEDIEQ
YQASDLADIF RYSPSVSVGG SVGVAQKIYI RGLEDAFLNV TVDGAQQTST LFHHIGRVTI
DPDLLQQIDV QAGAGEATSG PGAIGGSIRF KTKDAQDMLK PEEQFGGRVK ANYFSNDGTR
YSGSLYGKLS DSWGVLGYYS TIDRDNMEDG NGNEIYGTAA DQDMAFLKVS GDIAENQFLS
LSVEQRDEEG EFSARPNWAV QEGDALYSSE AQRDTYVANY RFAHSALVHI EATAYQTDSS
FRGGRFDWLA EIDTYGFDLR NTSETGQHKF VYGLDYRHDE VTSGSAQGAT ENAEEGSVLG
IYAQGYTDLT PELLLSYGVR YDDYDFEQNI LIDEYYGEPV TDVASTLDDS EVSFNVGLAY
DLTQEWTVGL GYAQAARGKQ IGDGFTIDGY LYDGSDIPVV ANDLVPETVE NIEASVEYNT
HNLNAKLSVY RSSLDDVIFE GYEGNAVFNN IGTLDTSGVE FDVAYRVNGI DLFLGFSSAD
TELKPRDDLY SVSYSSIDIN GYEFVGLGNS RGNTWVAGAD YDINPDISIG VSVAKVDSID
IDTLHQAVDL GWTDALYRLN KPSYTTVDIY GKWHITNNLM VNLAVSNLFD KLYIDHSSVG
DYSEVFATVI GPYEAGRDVR LSVSYDF
|
|---|
| |