Gene Patl_3413 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3413 
Symbol 
ID4175190 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp4087855 
End bp4088997 
Gene Length1143 bp 
Protein Length380 aa 
Translation table11 
GC content47% 
IMG OID638056444 
Producthypothetical protein 
Protein accessionYP_662973 
Protein GI109899718 
COG category[S] Function unknown 
COG ID[COG3182] Uncharacterized iron-regulated membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCAGTA ATGTAATCAA GAGGTGGGTC TTTTGGGCCC ATCTAGTGAC GGGGCTGGTG 
GCAGGTCTGT TTGTCTTTTG TATGTCGTTT ACTGGTGTGT TATTGACCTA CGAGCGGCAA
ATTATTGAAT TCAGCGAAAT GCAATATGCC GTCGAGCCTG ACACATTAGC TAGGCGTATC
AGCACCGATG AGGTTGTTGA TATCTTGCAC CAACTCCATC CCAATGAGCA TCATATATTT
ATCCGCTGGG TGAACAAAGA GGGTGCCGCT ATACCTGCCT GGTCCGGTAA GAGCAGTTAT
TTACTGCACC CTTATACGGG AGAGGTGTTG CGAGACGGTG AGGGCGTGAC GGCTGAGTTT
TTCCACCAAG TGACCAACTT GCATCGCTAT TTACTGCTTG CGGGAGATTC TCGCGCTATC
GGCAAAAGCA TTACGGCTTA CGCGAACCTA GTCTTTTTAT TTTTACTGCT CAGCGGTCTG
TATTTATGGC TACCGAAACG TTTTAATCGC ACCGCTTTAA AACATGCATT TAGGTTACCA
AAGCGTTATT CAAATACTCA GCATCGCTAT CGACAATGGC ACTTGGTTTT TGGAATTTGG
TGCTTGCCCG CACTGTTTGT TATTGCGCTA ACAGCCACCC TTTTTCATTT CACGTGGGCA
AATGAAGCGC TATATGGTGT GTTTGGGGAA AGTGTACCGC AACGAGAAAC TCACCAAGCA
CCCACAAGTT TAGCGGCGGA TGTTGTGCCT TACGAGACTT TGTTTCAATT TGCTATTGGC
CACGCAAATG ACAATGACTA CGCTGATTGG CATTCCATGT GGTTGGAAAT AGGAGAGGAG
GAAAATGAGG CCCGCTTCTA TATCGACAAA AGCATTGGTC ACAGACAAGA GCTGGCGTAT
TCATTGTATT TTGATACTTC CAGCGGCGAT ATCAGTAAGG TATTGCGAAA ATCAGATTGG
TCCCGCGGAG GTCAAGCGTG GGGCACAGCT CGATTTTTAC ACACAGGGGA ATACTTCGGC
GTAATAGGCC AGACTATTGC TGGCTTGGTG TCTTTAATGG CTTGCATTTT GGTGTACACA
GGTATTTTAC TGGCGTGGCG ACGATTGATA ACAGCGCCTC GACAAAGAAA TACACCTACA
TAG
 
Protein sequence
MSSNVIKRWV FWAHLVTGLV AGLFVFCMSF TGVLLTYERQ IIEFSEMQYA VEPDTLARRI 
STDEVVDILH QLHPNEHHIF IRWVNKEGAA IPAWSGKSSY LLHPYTGEVL RDGEGVTAEF
FHQVTNLHRY LLLAGDSRAI GKSITAYANL VFLFLLLSGL YLWLPKRFNR TALKHAFRLP
KRYSNTQHRY RQWHLVFGIW CLPALFVIAL TATLFHFTWA NEALYGVFGE SVPQRETHQA
PTSLAADVVP YETLFQFAIG HANDNDYADW HSMWLEIGEE ENEARFYIDK SIGHRQELAY
SLYFDTSSGD ISKVLRKSDW SRGGQAWGTA RFLHTGEYFG VIGQTIAGLV SLMACILVYT
GILLAWRRLI TAPRQRNTPT