| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3410 |
|---|
| Symbol | |
|---|
| ID | 4175187 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4083105 |
|---|
| End bp | 4085450 |
|---|
| Gene Length | 2346 bp |
|---|
| Protein Length | 781 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638056441 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_662970 |
|---|
| Protein GI | 109899715 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACAA CCGCTAAAAC ACACTTAGCA CTTTGCATTG CTATGGCCAT AGGTAGCCAA
TCTTTTATTA GCTCAGCAAT TGCTCAAGAA ACACCAGACG ATGCTGCGAT TGAAGAAATC
ACGGTTGTGG GTAAAAGCGT TTCTTACGCA AACAACCAAA CGTCTGATGA GATGGCAAAG
CAGCAAAGCT CGTTGACCAG TGCCCTTGCG GTGATTGATA ACCTACCGGG CGTGTTGATC
AACGAAGGGG ATACCTTTGG CTCAGATGAT TGGTCTACCA CTGTGTCTAT TCGCGGTTTT
CAATTAAGCC TAGATGAGCA GCAAATCGGT ATCACCATTG ATGGTATTGC TAACGGTAAC
TCAAACTATG GCGGCGGTGC TAAGGCTAAC CGTTACATCG ACACCGAAAA CTTGGGCCGA
GTTGAGGTAT CTCAAGGGAC CGGTGATATT GCATCGCGTT CTAACGAGGC CTTAGGCGGT
ACGCTTAACT TCACCACCAT TGACCCTGGC ATGGAAGAGT CCATGGTGGT GAGTATTTCT
GCTGGTAGTT TTGATGCGCA GAAGTACTTC GTGCGCTACG AAACAGGCGA AATAGCACCT
GATACCTACG CATGGTTCAG TGCGTCTAGC AGCGAAAACA CTGATTGGGT AACCCAAACC
GCTGAGAATA AACGTGACCA TTTAGCGGCT AAGTTTATGA CGGTAGTGAG CGACGTTGAT
ATCAAAGGGT ATTTCTCGTG GGATGATGTG CACGAAGATA ACTACCAGCG CGTCAGTCTA
GCCCAGTTTG AACAAAACCC TGAGTCAGAT GGCTTGTCGG GTGAGTGGGT GGGCATTCCT
TATGTGGATC AGGTTTTTCG TCAGGCTTGG TCAAGCTTAC GTGAAAACAT GTTTGCCTAT
TTAAGTGCTG ATTATAAAGC GGATAACGTT GAGATATCGG GCAATGTTTA TTACCACGAC
AACGAAGGCC GTGGTGATTG GGCTCCTCAG TACATTGTTG ATGTAAAAGA GGACGGTGAT
GGCGTGGCGC ATTCAGAGCT TTCATCGGGG AATACCGTTT ACGGTGGTAG TGCGATCCGC
GAGCTTTTGT TTGTTAACGC CAGCGGATTA GCCGTTAGCC CCATTGCCGG TTGTGAAAGC
ACGATCACCG CGCCGTATGG CGGTGCAGGC CCAGAATATG ACCCAGGTTG TTATGCACAA
GGTGCAATCC CCGTTGGTTC ATACCGCCAC ACTCATTACG AGAAAGAGCG TTTCGGTTTT
GACGCAGATT TTGCGTGGTA CACACAAATA AATGATATGG ATAACACCTT ACGTGGTGGT
ATTTGGTACG AAGATTACAA CCGTAAAGAA TCACGTGATT GGCACAAAAT TCTAGATTCT
CGCTCAAGCT TTGAATTCGA CCACACGCCT TATTGGGTGC AGTACGAACG TGAGTTCCCA
GTAGAAACTT TAATGGTTTA CGCAGAAGAC GAGCTAGACA TGGGCTGGGC CAGTATTCGC
TTAGGCATGA AACGTTTCTT CGTTGATTTA GAGCGCCAAG ATAACTTTGA CGCTGCTAAC
AAAGCAGAGC TCAATTCTGA CTCAGACACG CTATTCTCTG GTGGTATTGT GGCGCAAACG
CCAATTGATG GCTTAGAAGT CTTCGCCGGT TACGCTGAGA ATTTTGCCGC GATTAAAGAC
ACAGTGCTTG AGCGCGACGC TTCAACGTTG ACCCAAGTTG AACCTGAAAC CGCTGAAAAT
GTGGATGTGG GTTTACGTTA CGTATCACAA AATATCAATG CGAGCTTAAC CTACTACAGC
ATCAAGTTTG ATAACCGCTT AACCTTTATC GCCCCTGATT CGCCAGATGG TATTGATTAC
CTAATCGGTA CTAACGGTAG CTACGTTAAC GTGGGCGGCA TCGAGTCTTC AGGTTTTGAA
GCGTCATTAT CATTCAATGT GACCGATGAA TTGTCAGTGT ATAGCTCATA TACCTTCAAC
GATTCAGAGT ACACAGATGG TTCAATCGAC TTCCCTGAAG GTAACACCGT ATTTGGTTCA
CCTGAGAATA TGGCAGTTGT GTCACTTGAT TGGACACGGG GAAACTACTT CATAGGTTCG
TCAACCAAAT GGGTAGATGA CCGTTTCATC GATGCTGCTA ATACCCAAGT GGCAGAGGCG
TATTTAGTCA CTGATTTTTA TGCCGGAGTC AGCCTTGATG CACCTATTCA AGGTATTGAT
TCAATCGACT TACGCTTCAC CGTAAATAAT ATGTTTGACG AAAGTTACTT GGGGGGTATT
GCAGGTCAAT CAGCTTGGAT TGGCGCACCG CGCACCGCTG CATTTAACGC ACAAGCACGT
TTCTAA
|
|---|
| Protein sequence | MKTTAKTHLA LCIAMAIGSQ SFISSAIAQE TPDDAAIEEI TVVGKSVSYA NNQTSDEMAK
QQSSLTSALA VIDNLPGVLI NEGDTFGSDD WSTTVSIRGF QLSLDEQQIG ITIDGIANGN
SNYGGGAKAN RYIDTENLGR VEVSQGTGDI ASRSNEALGG TLNFTTIDPG MEESMVVSIS
AGSFDAQKYF VRYETGEIAP DTYAWFSASS SENTDWVTQT AENKRDHLAA KFMTVVSDVD
IKGYFSWDDV HEDNYQRVSL AQFEQNPESD GLSGEWVGIP YVDQVFRQAW SSLRENMFAY
LSADYKADNV EISGNVYYHD NEGRGDWAPQ YIVDVKEDGD GVAHSELSSG NTVYGGSAIR
ELLFVNASGL AVSPIAGCES TITAPYGGAG PEYDPGCYAQ GAIPVGSYRH THYEKERFGF
DADFAWYTQI NDMDNTLRGG IWYEDYNRKE SRDWHKILDS RSSFEFDHTP YWVQYEREFP
VETLMVYAED ELDMGWASIR LGMKRFFVDL ERQDNFDAAN KAELNSDSDT LFSGGIVAQT
PIDGLEVFAG YAENFAAIKD TVLERDASTL TQVEPETAEN VDVGLRYVSQ NINASLTYYS
IKFDNRLTFI APDSPDGIDY LIGTNGSYVN VGGIESSGFE ASLSFNVTDE LSVYSSYTFN
DSEYTDGSID FPEGNTVFGS PENMAVVSLD WTRGNYFIGS STKWVDDRFI DAANTQVAEA
YLVTDFYAGV SLDAPIQGID SIDLRFTVNN MFDESYLGGI AGQSAWIGAP RTAAFNAQAR
F
|
|---|
| |