Gene Patl_3392 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3392 
Symbol 
ID4175169 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp4067039 
End bp4067896 
Gene Length858 bp 
Protein Length285 aa 
Translation table11 
GC content48% 
IMG OID638056423 
Productprotein of unknown function RIO1 
Protein accessionYP_662952 
Protein GI109899697 
COG category[D] Cell cycle control, cell division, chromosome partitioning
[T] Signal transduction mechanisms 
COG ID[COG1718] Serine/threonine protein kinase involved in cell cycle control 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATAC CTAAAAGAAT ACAACCCCTG GTTGATGACG GCCTCGTTGA TGAGGTGCTT 
TATCAGCTAA TGAGCGGCAA AGAAGCTACA GTTTATGCTG TGCGCTGTGG TAACGAAATC
CGCTGCGCCA AAGTGTATAA AGAAGCGATG AAGCGCAGTT TTAAAAAAGC GGCGCAATAT
CAAGAAGGGC GTAAAGTGCG CAACACCCGC CGCGCCCGAG CCATGGAAAA GGGGTCAAAA
TTCGGTCGTA AGCAGCAAGA AGACGCTTGG CAGAACACTG AGGTAGATGC CTTATTTACG
TTAGCTAAAG CCGGGGTTCG TGTGCCTGAG CCTTACGGCT GTTATGACGG TGTATTGCTA
ATGGAGTTGA TCACCGATGA CGAAGGCGAT GTGGCGCCTC GTTTAAATGA TGTGACTATG
CCTGCTGAAC AAGCCATAGA AGATCACGCC ATTGTGATGG TGTATGTGAT GCGTATGTTA
TTAGCCGGTT TGGTGCATGG TGACTTGTCA GAATTTAATG TTTTGGTCGA TGCTTACGGC
CCCGTGATCA TCGATTTGCC CCAAGTGGTT GATGCGGCAG CCAATAACAA TGCGTTTAGC
ATGTTACAGC GCGACGTGCG CAATATGACT GAGTACTACG CACAATATGC CCCAGAGCTT
AAAAACAGCC ATTACGCCGA AGAAATGTGG GCTTTGTTTG AAGCAGGTGA GCTTGAAGCA
GATACCCAGT TAACTGGGCA TTTTGATTTC CCAGATGATG AAGCGGATGT CGATACTGTT
TTAGAAGAAA TTAAAGCCGC GTTTGAAGAA GAACAAGAGC GTAAAGCACG CATCGCAGGC
CCTAGTGACG AAGATTAG
 
Protein sequence
MKIPKRIQPL VDDGLVDEVL YQLMSGKEAT VYAVRCGNEI RCAKVYKEAM KRSFKKAAQY 
QEGRKVRNTR RARAMEKGSK FGRKQQEDAW QNTEVDALFT LAKAGVRVPE PYGCYDGVLL
MELITDDEGD VAPRLNDVTM PAEQAIEDHA IVMVYVMRML LAGLVHGDLS EFNVLVDAYG
PVIIDLPQVV DAAANNNAFS MLQRDVRNMT EYYAQYAPEL KNSHYAEEMW ALFEAGELEA
DTQLTGHFDF PDDEADVDTV LEEIKAAFEE EQERKARIAG PSDED