| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3368 |
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| Symbol | |
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| ID | 4175145 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4040427 |
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| End bp | 4042580 |
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| Gene Length | 2154 bp |
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| Protein Length | 717 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638056399 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_662928 |
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| Protein GI | 109899673 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACCGT CATCTCCTCG CTCATCCTAT ATATGGTGTT TATCCCCCGT CGCTTTGGCC
ATCAGCAGTA CTTTCTCTTT TGCAATACAT GCTGAAGAGA CCATTGAAAT AGTCGAAATC
AATGGTCATC AACAAAATAA TGCGAGTCAA CTAGGGTCAG TGGACGAATT GTTAAAGCGT
CAAGGTGTCG ATTTTTCTGC TGCAGGCGGC ATGTCGAGCT TACCGGTTTT AAATGGCATG
ATGGGCGACA GGGTAAAAGT GTTAATTGAT GGGGCTGATA TTACCGCCTC TTGCGCTAAT
CACATGAATC CGCCTTTATC ATATGTATCG GCCAACCAAG TTCAGGTACT GAATGTTGTT
GCTGGGATAA GCCCTGTCAG CGCAGGTGGT GATAACATTG CCGGCGTTAT TAGCGTCAAT
GAGATCGCTC CACTGTACTT GGAAGGTAAC GATGTGCGTT GGCATTCAGG TTACGGCTCA
GTGCAATACA ACAGTAATAA TCAAGCAAAA TCAATAGGGC TAGGGGCCCG TATGGCAAGC
CAAAATTTTA GTCTTGATTA CCAAGGGGCT TTTGAGGATG CAAAAAGTTA CGAAGACGGT
CATGGCAACA CAGTATTGGA CACGTTATAC AGGGCACAAA ACCACGCATT AACTGTCGCT
GTAAAAGACG ATAAACAACA GCTCGCTGTT AAACTTAACC ACCAGAATAT CCCATTTCAG
GGATTCCCTA ATCAATTTAT GGATATGACT GACAACAAGA GTTATGGCAT GACTAGCTTG
TATCGGCGTC AGCTTGATGA GGGAGATTTT GAAGTTCAAG TAAATTGGCA CGGTGTTAAA
CATGAGATGG GATTTTTCAG TGATGAAAAA ACGGGCATGA TGCCCATGAA AACGTCGGCA
GATGATTACA GTTATCGATT GAACTGGCAA TTTATCACCA GCACAAACAA TACCGTCAAT
TTTGGACATG AGTATTTTGA GTATCATCTA GATGATTGGT GGCCTGCAGT TGAAGACTCT
ATGATGATGG GGCCAAACAA TTACATCAAT ATTAATGACG GTAAGCGTCA GCGAATAGCT
GTTTTTGCTG AAACATCTCA GTCACTCAAT ACCAATTGGT GGCTATCTGC TGGTATACGC
CTTGAGCAGG TAACGACCAA TACCGGTGAG GTTCAGCCTT ATACCAATGA CACATTGATG
GACATGAGCT CAATGCATAT GTCAATGGAG CCCAGCATGT CTATCAGTGC GTTAAACAAT
AACGATGCTG CAGATATTTA TAACGCAATG AACAGAAAAC GTAGCAATAC GTTAATAGAT
GCGACGCTCA GCACGCGCTA CTTATTTGAT GCCAGCCAGC AACTAGAATT GGCTATTGCC
CGTAAAAGTC GAGCACCCAA TTTATACGAA CGTTACAGCT GGGGCGTCAG TACCATGGCG
ACCACAATGA TAGGTTGGTT CGGTGACGGT AACGGTTATA TAGGCAACCC CAACCTAGCA
CCAGAAACAG CTCGCACCTT GAGCGTTAAC TATAGCGATT CGACAGTGGA TAATGAATGG
AAATTTAGTG CCAATGCTTG GTATACGTCG GTAAAAGATT ACATTGATGC TGAAATAGTG
AGTTCCTTTA ACCATGCCTC GTCCGGTGCT GGCAACAGGA ATATTCTGCA ATTCACAAAT
TTAGATGCAA CCCTGTATGG GGTTAAGTTG AATGGGTCAA TTCAGTTCTT AGATTCTGAA
AAATGGGGGC TATGGCAACT GAACGCTAAT CTATCCACCA CTCGCGGCAA GAGGGATGAC
AACGAAGGTG ACTTGTATCA AATAGTGCCA CTTAAATCTG AATTGAAAGT CGAGCAAAAA
ATGGGGAACT GGCAAAATGC AATTGCATGG CAATGGGTAG CAAGTAAGAA AGATACAGAT
GAACGACGTT TAGAAAATAG CACCAAAAGC TATCATCTCA TTAATGTGAG CAGCAAATTA
ACTTGGCAAG ACGTTACCCT ATCATTCGCA GTTAATAACT TATTTGACAC TTACTATGCG
TTACCTATGG GAGGTGTGAG CATCGCCGAG TATAAAATGG ATAACAGCCA AGGCTTCAGC
CAATTAGCGG GCGCGGGGCG GTCTGTTAAT ATTGGCCTGA GTTACGCGTT CTAG
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| Protein sequence | MKPSSPRSSY IWCLSPVALA ISSTFSFAIH AEETIEIVEI NGHQQNNASQ LGSVDELLKR
QGVDFSAAGG MSSLPVLNGM MGDRVKVLID GADITASCAN HMNPPLSYVS ANQVQVLNVV
AGISPVSAGG DNIAGVISVN EIAPLYLEGN DVRWHSGYGS VQYNSNNQAK SIGLGARMAS
QNFSLDYQGA FEDAKSYEDG HGNTVLDTLY RAQNHALTVA VKDDKQQLAV KLNHQNIPFQ
GFPNQFMDMT DNKSYGMTSL YRRQLDEGDF EVQVNWHGVK HEMGFFSDEK TGMMPMKTSA
DDYSYRLNWQ FITSTNNTVN FGHEYFEYHL DDWWPAVEDS MMMGPNNYIN INDGKRQRIA
VFAETSQSLN TNWWLSAGIR LEQVTTNTGE VQPYTNDTLM DMSSMHMSME PSMSISALNN
NDAADIYNAM NRKRSNTLID ATLSTRYLFD ASQQLELAIA RKSRAPNLYE RYSWGVSTMA
TTMIGWFGDG NGYIGNPNLA PETARTLSVN YSDSTVDNEW KFSANAWYTS VKDYIDAEIV
SSFNHASSGA GNRNILQFTN LDATLYGVKL NGSIQFLDSE KWGLWQLNAN LSTTRGKRDD
NEGDLYQIVP LKSELKVEQK MGNWQNAIAW QWVASKKDTD ERRLENSTKS YHLINVSSKL
TWQDVTLSFA VNNLFDTYYA LPMGGVSIAE YKMDNSQGFS QLAGAGRSVN IGLSYAF
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