Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3352 |
Symbol | |
ID | 4175129 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 4019041 |
End bp | 4020465 |
Gene Length | 1425 bp |
Protein Length | 474 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638056383 |
Product | dihydrolipoamide dehydrogenase |
Protein accession | YP_662912 |
Protein GI | 109899657 |
COG category | [C] Energy production and conversion |
COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000157637 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGTGAAA TTAAAACTCA GTTGGTAGTG CTTGGTGCGG GCCCTGGTGG TTATTCCGCG GCTTTCCGTG CTGCTGACTT AGGAATCGAA ACAGTAATTG TTGACGTAAA CAGCAAGCTA GGTGGTGTGT GCTTAAACGT AGGGTGTATC CCTTCAAAAG CTCTGCTTCA TGTAGCAAAG GTAATCGAAG AAGCTAAAGC GTTATCGGCT CATGGTGTCG ATTTTGGCGC GCCAAAATTT GATTTAGACA AAATTCGTGA CTGGAAAGAC AGTGTAGTTG ACAAGCTCAC TGGTGGTCTC GCTGGCATGT CTAAAATGCG TAAAGTGAAA CACGTGCAAG GTTACGGCAA ATTCACAGGC AGTAACACCC TTGAAGTGAA AGGCGACGAC GGCACAACCA CAATTTCTTT TGACAACGCT ATTATTGCCG CCGGCTCTGA GCCTGTTAGC TTGCCTTTTA TCCCTCAAGA TGACCCTCGG GTAATCGACT CAACTGGCGC CCTAGAGATG AAAGACATCC CTGGTAAAAT GCTAGTTCTA GGCGGTGGTA TCATCGGTCT TGAAATGGGT ACGGTATACA GTGCGTTAGG TTCACAAATT GACGTGGTTG AGTTCTTGGA TCAATTGGTG CCAGCAGCTG ACAAGGACAT CGTTAAAATT TACCAAAAAA CCGTTAAAGA CAAATTCAAC ATCATGCTTG AAACCAAAGT GACTGCGGTT GAAGCGAAAG ATGACGGTTT GTACGTGACG TTTGAAGGCA AACAAGCACC GGCAGAACCG GTTAAATACG ACAAAGTATT GGTTGCAGTG GGTCGTCGTC CTAACGGTAA GTTAGTTGAC GCTGACAAAG CTGGTGTAAC CGTTGATGAG CGCGGGTTTA TCAATGTTGA TAAGCAAATG CGCACCAACG TTAGCAGCAT TTTTGCTATC GGTGACCTAG TAGGTCAACC TATGCTTGCT CACAAAGCCG TACATGAAGG CCATGTAGCG GCTGAAGTTA TTTCTGGTAT GAAGCATTAC TTTGACCCGA AATGCATTCC TTCTGTTGCC TACACTGAGC CAGAAATGGC TTGGGTGGGG TTAACTGAAA AAGAAGCAAA AGAGCAAGGT ATAAGCTTTG AAACAGCTAA CTTCCCTTGG GCAGCTTCCG GTCGAGCAAT CGCTTCTGCT GCTACCAACG GTATGACTAA GCTTATTTTC GATAAAGACA CTCACCGCAT CATCGGTGGT GCCATTGTGG GTACCAACGC AGGCGAAATG CTTGGCGAAA TTGGTCTTGC GATCGAAATG GGTGCTGATG CTGAAGACAT CGCATTGACT ATCCATGCTC ACCCTACCTT GAATGAGTCT ATAGGTCTGG CTGCTGAAAT GTACGAAGGT AGCATTACAG ATTTGCCTAA CCCGAAAGCG AAAAAGAAAA AGTAA
|
Protein sequence | MSEIKTQLVV LGAGPGGYSA AFRAADLGIE TVIVDVNSKL GGVCLNVGCI PSKALLHVAK VIEEAKALSA HGVDFGAPKF DLDKIRDWKD SVVDKLTGGL AGMSKMRKVK HVQGYGKFTG SNTLEVKGDD GTTTISFDNA IIAAGSEPVS LPFIPQDDPR VIDSTGALEM KDIPGKMLVL GGGIIGLEMG TVYSALGSQI DVVEFLDQLV PAADKDIVKI YQKTVKDKFN IMLETKVTAV EAKDDGLYVT FEGKQAPAEP VKYDKVLVAV GRRPNGKLVD ADKAGVTVDE RGFINVDKQM RTNVSSIFAI GDLVGQPMLA HKAVHEGHVA AEVISGMKHY FDPKCIPSVA YTEPEMAWVG LTEKEAKEQG ISFETANFPW AASGRAIASA ATNGMTKLIF DKDTHRIIGG AIVGTNAGEM LGEIGLAIEM GADAEDIALT IHAHPTLNES IGLAAEMYEG SITDLPNPKA KKKK
|
| |