Gene Patl_3352 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3352 
Symbol 
ID4175129 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp4019041 
End bp4020465 
Gene Length1425 bp 
Protein Length474 aa 
Translation table11 
GC content46% 
IMG OID638056383 
Productdihydrolipoamide dehydrogenase 
Protein accessionYP_662912 
Protein GI109899657 
COG category[C] Energy production and conversion 
COG ID[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 
TIGRFAM ID[TIGR01350] dihydrolipoamide dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000157637 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGAAA TTAAAACTCA GTTGGTAGTG CTTGGTGCGG GCCCTGGTGG TTATTCCGCG 
GCTTTCCGTG CTGCTGACTT AGGAATCGAA ACAGTAATTG TTGACGTAAA CAGCAAGCTA
GGTGGTGTGT GCTTAAACGT AGGGTGTATC CCTTCAAAAG CTCTGCTTCA TGTAGCAAAG
GTAATCGAAG AAGCTAAAGC GTTATCGGCT CATGGTGTCG ATTTTGGCGC GCCAAAATTT
GATTTAGACA AAATTCGTGA CTGGAAAGAC AGTGTAGTTG ACAAGCTCAC TGGTGGTCTC
GCTGGCATGT CTAAAATGCG TAAAGTGAAA CACGTGCAAG GTTACGGCAA ATTCACAGGC
AGTAACACCC TTGAAGTGAA AGGCGACGAC GGCACAACCA CAATTTCTTT TGACAACGCT
ATTATTGCCG CCGGCTCTGA GCCTGTTAGC TTGCCTTTTA TCCCTCAAGA TGACCCTCGG
GTAATCGACT CAACTGGCGC CCTAGAGATG AAAGACATCC CTGGTAAAAT GCTAGTTCTA
GGCGGTGGTA TCATCGGTCT TGAAATGGGT ACGGTATACA GTGCGTTAGG TTCACAAATT
GACGTGGTTG AGTTCTTGGA TCAATTGGTG CCAGCAGCTG ACAAGGACAT CGTTAAAATT
TACCAAAAAA CCGTTAAAGA CAAATTCAAC ATCATGCTTG AAACCAAAGT GACTGCGGTT
GAAGCGAAAG ATGACGGTTT GTACGTGACG TTTGAAGGCA AACAAGCACC GGCAGAACCG
GTTAAATACG ACAAAGTATT GGTTGCAGTG GGTCGTCGTC CTAACGGTAA GTTAGTTGAC
GCTGACAAAG CTGGTGTAAC CGTTGATGAG CGCGGGTTTA TCAATGTTGA TAAGCAAATG
CGCACCAACG TTAGCAGCAT TTTTGCTATC GGTGACCTAG TAGGTCAACC TATGCTTGCT
CACAAAGCCG TACATGAAGG CCATGTAGCG GCTGAAGTTA TTTCTGGTAT GAAGCATTAC
TTTGACCCGA AATGCATTCC TTCTGTTGCC TACACTGAGC CAGAAATGGC TTGGGTGGGG
TTAACTGAAA AAGAAGCAAA AGAGCAAGGT ATAAGCTTTG AAACAGCTAA CTTCCCTTGG
GCAGCTTCCG GTCGAGCAAT CGCTTCTGCT GCTACCAACG GTATGACTAA GCTTATTTTC
GATAAAGACA CTCACCGCAT CATCGGTGGT GCCATTGTGG GTACCAACGC AGGCGAAATG
CTTGGCGAAA TTGGTCTTGC GATCGAAATG GGTGCTGATG CTGAAGACAT CGCATTGACT
ATCCATGCTC ACCCTACCTT GAATGAGTCT ATAGGTCTGG CTGCTGAAAT GTACGAAGGT
AGCATTACAG ATTTGCCTAA CCCGAAAGCG AAAAAGAAAA AGTAA
 
Protein sequence
MSEIKTQLVV LGAGPGGYSA AFRAADLGIE TVIVDVNSKL GGVCLNVGCI PSKALLHVAK 
VIEEAKALSA HGVDFGAPKF DLDKIRDWKD SVVDKLTGGL AGMSKMRKVK HVQGYGKFTG
SNTLEVKGDD GTTTISFDNA IIAAGSEPVS LPFIPQDDPR VIDSTGALEM KDIPGKMLVL
GGGIIGLEMG TVYSALGSQI DVVEFLDQLV PAADKDIVKI YQKTVKDKFN IMLETKVTAV
EAKDDGLYVT FEGKQAPAEP VKYDKVLVAV GRRPNGKLVD ADKAGVTVDE RGFINVDKQM
RTNVSSIFAI GDLVGQPMLA HKAVHEGHVA AEVISGMKHY FDPKCIPSVA YTEPEMAWVG
LTEKEAKEQG ISFETANFPW AASGRAIASA ATNGMTKLIF DKDTHRIIGG AIVGTNAGEM
LGEIGLAIEM GADAEDIALT IHAHPTLNES IGLAAEMYEG SITDLPNPKA KKKK