| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3344 |
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| Symbol | |
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| ID | 4175121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4009560 |
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| End bp | 4010006 |
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| Gene Length | 447 bp |
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| Protein Length | 148 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638056375 |
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| Product | prepilin-type cleavage/methylation |
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| Protein accession | YP_662904 |
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| Protein GI | 109899649 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4969] Tfp pilus assembly protein, major pilin PilA |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.62769 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAACACAA CTGACATCAA TACAGTCGCG ACAAAAAAAC AAAGCGGTTT TACCTTAATC
GAATTAATGA TCGTGGTGGC CATCATCGGC ATCTTAGCCA TGATAGCTCT ACCTGCCTAT
CAAACTTACA CGGCAAAAGC CGGCTTCAGT GAAGTGGTGT CAGCCGCTGG CCCAGCGAAA
ACGGCTGTTG AAATCTGTGT GCAAACCGGT ATTCCGGCAA ACTGTGATGA TCTTGCCGAT
CAAGCTGGCT GGGCGTCAGG TGATCTAGTG AACACCGTGG TGATCTCAGG AACAGAAGCA
GCTGGATACG TCGTAACTGT CACTCCTAAC GCTGATGTGC AGTCTGGTGT TACCGCCGCT
GAAACTTATG TGTTAACCGG CACTGTTGCT GATGGCTCGG TCAACTGGGC TACTTCAGGT
GGTTGTATTG CTGCTAACTT ATGTTAA
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| Protein sequence | MNTTDINTVA TKKQSGFTLI ELMIVVAIIG ILAMIALPAY QTYTAKAGFS EVVSAAGPAK
TAVEICVQTG IPANCDDLAD QAGWASGDLV NTVVISGTEA AGYVVTVTPN ADVQSGVTAA
ETYVLTGTVA DGSVNWATSG GCIAANLC
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