Gene Patl_3334 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3334 
Symbol 
ID4175111 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp3999764 
End bp4000492 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content48% 
IMG OID638056365 
Producthypothetical protein 
Protein accessionYP_662894 
Protein GI109899639 
COG category[S] Function unknown 
COG ID[COG1385] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR00046] RNA methyltransferase, RsmE family 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGAATCT CCAGAATTTA TCATCCTGAT ACCCTTCATC CAGACCAAGA ATTGTCATTA 
ACCCCTGACG CCAGTAATCA TGTCGCCAAT GTATTGCGTT CCAAGGTCGG CCAGCCTGTC
GTTCTGTTCA ACGGTGATGG CAATGAGTAC AGCGGTGAAT TTATCGATGT TTCCAAGCGT
AAGGTGCGTG TACAAATCGA CGCTAAGCTC AGCATGAGTC TTGAATCACC TTTAAGCATT
CACTTAGGCC AAGGCGTATC ACGTGGCGAC AGAATGGATT GGGTGCTGCA AAAATCTGTT
GAGTTAGGTG TCACTGAAAT AACACCGCTC ATCACAGAGC GCTGCGGTGT GAAGCTCGAT
GAGCAACGTT GGCAGAAGAA ACATGCACAG TGGCAAAAAA TTATTATTGC GGCGTGTGAA
CAGTGCGGCC GTAACGTCTT GCCCGTTTTG CATATGCCGA TGGATTTTCA AAGCTGGGTT
AATCAATCTA CGCAAGCATT GCGCTTAGCC CTACACCCAA GAGCCGAGAA AAGCTTTCGT
CATACCAGCG TTGGCAAAGA TGGCGTACGT TTGCTAATAG GTCCGGAAGG TGGGTTTTCC
GATCAGGAGC TTTATCAGAC CGAACAAGGC GGGTTTCAAA CCGTTCAATT AGGCCCAAGG
GTACTGCGTA CTGAAACCGC CGCAATCACT GCTATCAGTG CCTTACAAGC AATTTACGGC
GATCTATAA
 
Protein sequence
MRISRIYHPD TLHPDQELSL TPDASNHVAN VLRSKVGQPV VLFNGDGNEY SGEFIDVSKR 
KVRVQIDAKL SMSLESPLSI HLGQGVSRGD RMDWVLQKSV ELGVTEITPL ITERCGVKLD
EQRWQKKHAQ WQKIIIAACE QCGRNVLPVL HMPMDFQSWV NQSTQALRLA LHPRAEKSFR
HTSVGKDGVR LLIGPEGGFS DQELYQTEQG GFQTVQLGPR VLRTETAAIT AISALQAIYG
DL