Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3334 |
Symbol | |
ID | 4175111 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 3999764 |
End bp | 4000492 |
Gene Length | 729 bp |
Protein Length | 242 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638056365 |
Product | hypothetical protein |
Protein accession | YP_662894 |
Protein GI | 109899639 |
COG category | [S] Function unknown |
COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGAATCT CCAGAATTTA TCATCCTGAT ACCCTTCATC CAGACCAAGA ATTGTCATTA ACCCCTGACG CCAGTAATCA TGTCGCCAAT GTATTGCGTT CCAAGGTCGG CCAGCCTGTC GTTCTGTTCA ACGGTGATGG CAATGAGTAC AGCGGTGAAT TTATCGATGT TTCCAAGCGT AAGGTGCGTG TACAAATCGA CGCTAAGCTC AGCATGAGTC TTGAATCACC TTTAAGCATT CACTTAGGCC AAGGCGTATC ACGTGGCGAC AGAATGGATT GGGTGCTGCA AAAATCTGTT GAGTTAGGTG TCACTGAAAT AACACCGCTC ATCACAGAGC GCTGCGGTGT GAAGCTCGAT GAGCAACGTT GGCAGAAGAA ACATGCACAG TGGCAAAAAA TTATTATTGC GGCGTGTGAA CAGTGCGGCC GTAACGTCTT GCCCGTTTTG CATATGCCGA TGGATTTTCA AAGCTGGGTT AATCAATCTA CGCAAGCATT GCGCTTAGCC CTACACCCAA GAGCCGAGAA AAGCTTTCGT CATACCAGCG TTGGCAAAGA TGGCGTACGT TTGCTAATAG GTCCGGAAGG TGGGTTTTCC GATCAGGAGC TTTATCAGAC CGAACAAGGC GGGTTTCAAA CCGTTCAATT AGGCCCAAGG GTACTGCGTA CTGAAACCGC CGCAATCACT GCTATCAGTG CCTTACAAGC AATTTACGGC GATCTATAA
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Protein sequence | MRISRIYHPD TLHPDQELSL TPDASNHVAN VLRSKVGQPV VLFNGDGNEY SGEFIDVSKR KVRVQIDAKL SMSLESPLSI HLGQGVSRGD RMDWVLQKSV ELGVTEITPL ITERCGVKLD EQRWQKKHAQ WQKIIIAACE QCGRNVLPVL HMPMDFQSWV NQSTQALRLA LHPRAEKSFR HTSVGKDGVR LLIGPEGGFS DQELYQTEQG GFQTVQLGPR VLRTETAAIT AISALQAIYG DL
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