Gene Patl_3333 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3333 
Symbol 
ID4175110 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp3998276 
End bp3999103 
Gene Length828 bp 
Protein Length275 aa 
Translation table11 
GC content42% 
IMG OID638056364 
ProductMscS mechanosensitive ion channel 
Protein accessionYP_662893 
Protein GI109899638 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3264] Small-conductance mechanosensitive channel 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTGAAT TCGACTCAGA ACAAATGTCA CAAATGATGG ACACTTACGT TATTCCTTGG 
GGAATTAATA TCGTAATGGC TATCTTGATC TACATCGTTG GTAAAATAGT TGTTGGCATC
ATCGTTAACT TGTTTGGCAA GGTAATGAAG CGCTCTAAAT ACGACGATAT GTTAGTAAAT
TTCATCAAAG CGATATTGAA CGCCATTCTG ATGTTGTTCG TTATCATCGC ATCATTGAAC
GAACTAGGTG TTGATACTAC CTCGCTTGTC GCGATTTTAG GTGCTGCTGG TTTAGCCATT
GGTTTATCTT TACAAGGTTC ACTACAAAAC TTTGCTGCAG GCGTAATGTT ACTTGTATTT
CGTCCATTTA AAGCGGGTGA CTTTGTTGAA GCGGGTGGAG CTGCAGGTGT GGTTAAGAGC
ATCAGTATTT TCACTACCAT CATGACCAGT GGTGATAACA AAGAAATTAT CGTACCTAAC
GGCCAAATAT ACAGTGGCAC CATCACTAAC TACTCTGCAA AAGAAACGCG CCGTGTAGAT
ATGGTTGTTG GTATCGGCTA TGACGCTGAC CTTAAGCGCG CTAAAGAAGT ATTGAAAGAG
CTAGCAGCTG CTGACCCACG CATTCTTCAA GATCCAGCGC CGACTATTGC TGTCGCTGAA
CTTGCTGATA GCAGCGTTAA CTTTGTGGTA CGTCCTTGGG TGAAATCTGC TGATTTCTGG
GGTGTTAAAT TCGATTTTAC CGAAGCGGTT AAATTACGTT TCGACCAAGA AGGTATTTCA
ATTCCATTCC CACAAATGGA TGTACACCTT CACAAAGACG CAGAATAA
 
Protein sequence
MFEFDSEQMS QMMDTYVIPW GINIVMAILI YIVGKIVVGI IVNLFGKVMK RSKYDDMLVN 
FIKAILNAIL MLFVIIASLN ELGVDTTSLV AILGAAGLAI GLSLQGSLQN FAAGVMLLVF
RPFKAGDFVE AGGAAGVVKS ISIFTTIMTS GDNKEIIVPN GQIYSGTITN YSAKETRRVD
MVVGIGYDAD LKRAKEVLKE LAAADPRILQ DPAPTIAVAE LADSSVNFVV RPWVKSADFW
GVKFDFTEAV KLRFDQEGIS IPFPQMDVHL HKDAE