Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3333 |
Symbol | |
ID | 4175110 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 3998276 |
End bp | 3999103 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638056364 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_662893 |
Protein GI | 109899638 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3264] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTTTGAAT TCGACTCAGA ACAAATGTCA CAAATGATGG ACACTTACGT TATTCCTTGG GGAATTAATA TCGTAATGGC TATCTTGATC TACATCGTTG GTAAAATAGT TGTTGGCATC ATCGTTAACT TGTTTGGCAA GGTAATGAAG CGCTCTAAAT ACGACGATAT GTTAGTAAAT TTCATCAAAG CGATATTGAA CGCCATTCTG ATGTTGTTCG TTATCATCGC ATCATTGAAC GAACTAGGTG TTGATACTAC CTCGCTTGTC GCGATTTTAG GTGCTGCTGG TTTAGCCATT GGTTTATCTT TACAAGGTTC ACTACAAAAC TTTGCTGCAG GCGTAATGTT ACTTGTATTT CGTCCATTTA AAGCGGGTGA CTTTGTTGAA GCGGGTGGAG CTGCAGGTGT GGTTAAGAGC ATCAGTATTT TCACTACCAT CATGACCAGT GGTGATAACA AAGAAATTAT CGTACCTAAC GGCCAAATAT ACAGTGGCAC CATCACTAAC TACTCTGCAA AAGAAACGCG CCGTGTAGAT ATGGTTGTTG GTATCGGCTA TGACGCTGAC CTTAAGCGCG CTAAAGAAGT ATTGAAAGAG CTAGCAGCTG CTGACCCACG CATTCTTCAA GATCCAGCGC CGACTATTGC TGTCGCTGAA CTTGCTGATA GCAGCGTTAA CTTTGTGGTA CGTCCTTGGG TGAAATCTGC TGATTTCTGG GGTGTTAAAT TCGATTTTAC CGAAGCGGTT AAATTACGTT TCGACCAAGA AGGTATTTCA ATTCCATTCC CACAAATGGA TGTACACCTT CACAAAGACG CAGAATAA
|
Protein sequence | MFEFDSEQMS QMMDTYVIPW GINIVMAILI YIVGKIVVGI IVNLFGKVMK RSKYDDMLVN FIKAILNAIL MLFVIIASLN ELGVDTTSLV AILGAAGLAI GLSLQGSLQN FAAGVMLLVF RPFKAGDFVE AGGAAGVVKS ISIFTTIMTS GDNKEIIVPN GQIYSGTITN YSAKETRRVD MVVGIGYDAD LKRAKEVLKE LAAADPRILQ DPAPTIAVAE LADSSVNFVV RPWVKSADFW GVKFDFTEAV KLRFDQEGIS IPFPQMDVHL HKDAE
|
| |