Gene Patl_3332 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3332 
Symbol 
ID4175109 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp3997397 
End bp3998203 
Gene Length807 bp 
Protein Length268 aa 
Translation table11 
GC content47% 
IMG OID638056363 
Productpeptidase M48, Ste24p 
Protein accessionYP_662892 
Protein GI109899637 
COG category[R] General function prediction only 
COG ID[COG4783] Putative Zn-dependent protease, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.835171 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACATTTT CACTTAGCAA AGTGTTCACC GCCGTCTGTG TATCCACGTT ACTATTGACG 
AGCTGTGCTA AATCACCATT AGGGCGCAAC CAACTTAAGC TTTATTCCTC TGATCAGCTA
GCTAACATGG GCCAGCAGAC ATTTGATGGC ATGAAATCAG AGCAGAAAGT CTCTAATACC
CAAGTCACCA ATAAATTTGT GTCTTGCGTA GCGGATGCCA TCACCAAGCA TGTACCGAAA
TCAGTATTCT CTGGTGAATG GGAATTGGTG GTTTTCGATG ACCCGCAAGT CAACGCATTC
GCGCTTCCAG GGGGCAAGAT TGGCGTGTAC ACAGGATTAC TTGATGTCGC AGAAAATCAA
GATCAGTTAG CTGCGGTAAT TGGCCATGAA GTGGGACACG TTATCGCTGA CCATGGTAAT
GAGCGGATGT CGAGCAGTAC CTTGATAGGT ATTGGCATGG AAGCAACCAA TCAATTATTG
CAAGCCAATC AAATCGCCAA TAACAATATG ATAATGGCCG CTATCGGTAT GGGCGTGCAA
GTAGGCGTAC AACTGCCTTT TAGCCGCACA CATGAAACCG AAGCGGACTT AATTGGCTTA
CAGTTAATGG CACAATCAGG CTTTGACCCA AAGCAATCGG TTAACCTATG GCAGAACATG
GATAAAGCGA GTGGTGATAA TCGTCAGGCA GAGATGCTGT CTACCCACCC TGCCCCGCAA
AGCAGAATCG AAAAGTTAGG TGAAAATATG GGACCGGCCC TTGCGTTATA TCAGCAGGCT
AAAGACCGTC CCCAATGTAA GACGTAA
 
Protein sequence
MTFSLSKVFT AVCVSTLLLT SCAKSPLGRN QLKLYSSDQL ANMGQQTFDG MKSEQKVSNT 
QVTNKFVSCV ADAITKHVPK SVFSGEWELV VFDDPQVNAF ALPGGKIGVY TGLLDVAENQ
DQLAAVIGHE VGHVIADHGN ERMSSSTLIG IGMEATNQLL QANQIANNNM IMAAIGMGVQ
VGVQLPFSRT HETEADLIGL QLMAQSGFDP KQSVNLWQNM DKASGDNRQA EMLSTHPAPQ
SRIEKLGENM GPALALYQQA KDRPQCKT