Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3332 |
Symbol | |
ID | 4175109 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 3997397 |
End bp | 3998203 |
Gene Length | 807 bp |
Protein Length | 268 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638056363 |
Product | peptidase M48, Ste24p |
Protein accession | YP_662892 |
Protein GI | 109899637 |
COG category | [R] General function prediction only |
COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.835171 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACATTTT CACTTAGCAA AGTGTTCACC GCCGTCTGTG TATCCACGTT ACTATTGACG AGCTGTGCTA AATCACCATT AGGGCGCAAC CAACTTAAGC TTTATTCCTC TGATCAGCTA GCTAACATGG GCCAGCAGAC ATTTGATGGC ATGAAATCAG AGCAGAAAGT CTCTAATACC CAAGTCACCA ATAAATTTGT GTCTTGCGTA GCGGATGCCA TCACCAAGCA TGTACCGAAA TCAGTATTCT CTGGTGAATG GGAATTGGTG GTTTTCGATG ACCCGCAAGT CAACGCATTC GCGCTTCCAG GGGGCAAGAT TGGCGTGTAC ACAGGATTAC TTGATGTCGC AGAAAATCAA GATCAGTTAG CTGCGGTAAT TGGCCATGAA GTGGGACACG TTATCGCTGA CCATGGTAAT GAGCGGATGT CGAGCAGTAC CTTGATAGGT ATTGGCATGG AAGCAACCAA TCAATTATTG CAAGCCAATC AAATCGCCAA TAACAATATG ATAATGGCCG CTATCGGTAT GGGCGTGCAA GTAGGCGTAC AACTGCCTTT TAGCCGCACA CATGAAACCG AAGCGGACTT AATTGGCTTA CAGTTAATGG CACAATCAGG CTTTGACCCA AAGCAATCGG TTAACCTATG GCAGAACATG GATAAAGCGA GTGGTGATAA TCGTCAGGCA GAGATGCTGT CTACCCACCC TGCCCCGCAA AGCAGAATCG AAAAGTTAGG TGAAAATATG GGACCGGCCC TTGCGTTATA TCAGCAGGCT AAAGACCGTC CCCAATGTAA GACGTAA
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Protein sequence | MTFSLSKVFT AVCVSTLLLT SCAKSPLGRN QLKLYSSDQL ANMGQQTFDG MKSEQKVSNT QVTNKFVSCV ADAITKHVPK SVFSGEWELV VFDDPQVNAF ALPGGKIGVY TGLLDVAENQ DQLAAVIGHE VGHVIADHGN ERMSSSTLIG IGMEATNQLL QANQIANNNM IMAAIGMGVQ VGVQLPFSRT HETEADLIGL QLMAQSGFDP KQSVNLWQNM DKASGDNRQA EMLSTHPAPQ SRIEKLGENM GPALALYQQA KDRPQCKT
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