Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3330 |
Symbol | |
ID | 4175107 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 3993777 |
End bp | 3995777 |
Gene Length | 2001 bp |
Protein Length | 666 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638056361 |
Product | transketolase |
Protein accession | YP_662890 |
Protein GI | 109899635 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0021] Transketolase |
TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0024244 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTTCAC GTCAACAACT CGCTAACGCA ATACGTGCGC TTAGTATGGA TGCAGTACAA CAGGCTAATT CAGGACACCC AGGCGCCCCA ATGGGCATGG CGGATATAGC CGAAGTATTG TGGAACGATT TTTTAAAGCA CAATCCGGCG AATCCAAACT GGGCTAACCG CGATCGCTTT ATTATGTCTA ACGGCCACGG TTCGATGTTA GTTTACTCAT TGTTGCATTT GACCGGTTAT GAGTTACCCA TTGAAGAGTT GAAAAACTTC CGTCAATTGC ATTCTAAAAC ACCAGGCCAC CCAGAGTATG GCTACGCGCC AGGCGTTGAA ACAACCACTG GCCCACTAGG TCAAGGCATC AGTAATGCAG TCGGTATGGC GATTGCTGAG AAAATGTTGG CAGCGCAATT CAACCAAGAA AAATTCGATA TCGTTGATCA TTTCACTTAT TGCTTCCTAG GTGATGGCTG TTTGATGGAA GGTATTTCTC ATGAAGCCTG CTCACTTGCT GGAACATTAG GTCTTGGCAA GTTAGTGGCA TTTTGGGATG ACAACGGTAT TTCTATCGAT GGTCACGTAG AGGGTTGGTT CACTGATAAT ACCCCTGCAC GTTTTGAAGC TTATGGTTGG CATGTTATTG CCGATGTTGA TGGCCACGAC CCACAAGCGA TTAAAGCGGC AGTTGAAACG GCGAAAGCCA ATACCACTCA ACCGACGTTG ATATGCTGTA AAACCGTTAT CGGTTTCGGT TCTCCAAATA AATCAGGTAG CCATGATTCA CACGGCTCAC CATTAGGTGC AGATGAAATC ACTGCGACCC GCGAATTCTT AAAATGGCCA TATGGGGCAT TTGAAATTCC GGCAGACATC TACGCAGGTT GGGATGCAAA AGCGTCAGGT TCTGATTTAG AGCAAGCATG GAATGAAAAA TTTGCTGCTT ACGGGAAAGC CCATCCTGAA TTAGCCGCTG AATTAACACG TCGTCTAAAC GGTGATTTAC CTGCTGATTT CGCTGAAAAA GCCCAAGCAT TCGTTGAGCA ATCTCAAGAG AAAGCTGAAA ATGTAGCGAG TCGTAAGTCG TCACAAAACT CTATCGAAGC ATTCGCTGGC ATCATGCCTG AAATTTTAGG TGGCTCGGCA GATTTGGCTG GTTCAAATCT AACGCTTTGG TCAAAATCTA AAGGCGTCAC AGCTGACGAT GCCAGCGGTA ACTATTTATA CTACGGTGTG CGCGAATTCG GTATGAGCGG CATCATGAAT GGTATTGGTT TGCACGGTGG TTTCCGTCCA TTTGGTGCCA CCTTCCTGAT GTTTATGGAA TATGCACGCA ATGCAGTGCG TATGGCTTCT TTGATGGGGA TTCCAAATAT CTTTGTTTAT ACCCATGACT CGATTGGTCA GGGCGAAGAT GGCCCAACTC ACCAGCCTAT CGAGCAATTA GCAAACTTGC GTTTAACGCC TAATTTAGCC ACATGGCGCC CTTGTGACGG TGCTGAAACA GCCGTTGCAT GGAAATCTGC GCTAGAGCGT AAAGATGGCC CTAGTGCATT GGTGTTTAGC CGTCAAGGTT TGCCTGGTCA AACGCGTAAC GCTGAACAAC TCGCTAACGT AGCTAAAGGG GGTTACATCC TCAAAGATAG CGATGGCGAG CCTCAAGTCA TTTTGATTGG TACCGGTTCT GAAGTCGGTG TTGCCATGGA TGCAGCTGAG CAATTAGCTG CCAAAGGCGT TGCTGTGCGC GTTGTGTCTA TGCCAAGTAC CTCGGTGTTT GACCAACAAG ATGCGGCTTA TCGCGAATCT GTATTACCGC GCGCAGTGAC TGCACGTGTA GCCGTTGAAG CTGCTCACGT CGATTACTGG AGCAAGTATG TTGGTCTTGA TGGTGCAGTC GTCGGAATGT CTACTTTTGG TGAGTCTGCA CCGGGTGGCG TACTACTCAA GCACTTCGGT ATCACAGCTG ATGCCGTGGC TGAGAAAGCA CAAGGTTTAT TGAATTCTTA G
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Protein sequence | MPSRQQLANA IRALSMDAVQ QANSGHPGAP MGMADIAEVL WNDFLKHNPA NPNWANRDRF IMSNGHGSML VYSLLHLTGY ELPIEELKNF RQLHSKTPGH PEYGYAPGVE TTTGPLGQGI SNAVGMAIAE KMLAAQFNQE KFDIVDHFTY CFLGDGCLME GISHEACSLA GTLGLGKLVA FWDDNGISID GHVEGWFTDN TPARFEAYGW HVIADVDGHD PQAIKAAVET AKANTTQPTL ICCKTVIGFG SPNKSGSHDS HGSPLGADEI TATREFLKWP YGAFEIPADI YAGWDAKASG SDLEQAWNEK FAAYGKAHPE LAAELTRRLN GDLPADFAEK AQAFVEQSQE KAENVASRKS SQNSIEAFAG IMPEILGGSA DLAGSNLTLW SKSKGVTADD ASGNYLYYGV REFGMSGIMN GIGLHGGFRP FGATFLMFME YARNAVRMAS LMGIPNIFVY THDSIGQGED GPTHQPIEQL ANLRLTPNLA TWRPCDGAET AVAWKSALER KDGPSALVFS RQGLPGQTRN AEQLANVAKG GYILKDSDGE PQVILIGTGS EVGVAMDAAE QLAAKGVAVR VVSMPSTSVF DQQDAAYRES VLPRAVTARV AVEAAHVDYW SKYVGLDGAV VGMSTFGESA PGGVLLKHFG ITADAVAEKA QGLLNS
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